MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA Brain:16.7 nTPM
GTEx:14.2 nTPM
FANTOM5:2.7 Scaled Tags Per Million
Mouse:49.2 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.3
1833 Male, age 53, unknown 13.1
1827 Male, age 72, unknown 12.9
2586 Male, age 75, left hemisphere 12.3
2666 Male, age 74, left hemisphere 12.0
2019 Male, age 18, unknown 11.4
2411 Female, age 72, unknown 10.9
1870 Female, age 42, unknown 10.8
2219 Male, age 76, both hemispheres 10.4
2828 Female, age 72, unknown 9.8
1830 Male, age 51, unknown 9.1
Dorsal raphe nucleus
nTPM: 12.2
1828 Male, age 53, unknown 15.2
2016 Female, age 72, unknown 12.6
2298 Female, age 72, unknown 12.1
2047 Male, age 72, unknown 11.3
2750 Male, age 76, both hemispheres 9.7
Inferior colliculus
nTPM: 10.9
1848 Female, age 42, unknown 12.9
2849 Male, age 72, unknown 11.6
1890 Male, age 53, unknown 10.8
2097 Female, age 72, unknown 8.4
Median raphe nucleus
nTPM: 13.2
2220 Male, age 76, midline 13.2
Periaquaductal grey, anterior
nTPM: 11.4
1795 Male, age 51, unknown 13.2
2502 Female, age 75, unknown 11.0
1947 Male, age 18, unknown 10.1
Periaquaductal grey, dorsal
nTPM: 14.4
2850 Male, age 76, both hemispheres 18.6
1840 Male, age 53, unknown 14.4
2464 Female, age 72, unknown 12.4
1831 Male, age 72, unknown 12.2
Periaquaductal grey, lateral
nTPM: 15.0
2140 Male, age 76, both hemispheres 16.5
2272 Male, age 74, both hemispheres 16.5
2053 Male, age 18, unknown 11.9
Pretectal area
nTPM: 16.7
1944 Female, age 72, unknown 23.1
1816 Male, age 51, unknown 21.7
2667 Female, age 75, unknown 20.0
1817 Female, age 42, unknown 17.9
1815 Male, age 53, unknown 16.5
2007 Male, age 72, unknown 16.5
2273 Male, age 74, both hemispheres 16.5
2224 Female, age 72, unknown 14.5
2825 Male, age 18, unknown 13.7
2407 Male, age 75, both hemispheres 12.9
2316 Male, age 76, right hemisphere 10.3
Red nucleus
nTPM: 10.4
2503 Female, age 72, unknown 13.1
1954 Female, age 42, unknown 11.5
2227 Male, age 72, unknown 11.2
2785 Male, age 18, unknown 10.9
2823 Male, age 76, right hemisphere 10.9
2725 Female, age 75, unknown 10.7
1865 Male, age 51, unknown 10.4
1821 Female, age 72, unknown 10.1
1904 Male, age 53, unknown 9.2
2769 Male, age 72, unknown 9.2
2588 Male, age 74, left hemisphere 9.0
2584 Male, age 75, left hemisphere 8.5
Substantia nigra
nTPM: 13.1
2241 Male, age 72, unknown 16.9
1889 Female, age 72, unknown 16.3
2699 Male, age 18, unknown 15.3
1916 Female, age 42, unknown 13.2
2665 Male, age 74, both hemispheres 12.9
2590 Female, age 75, unknown 12.8
2583 Male, age 75, right hemisphere 12.7
1851 Male, age 51, unknown 11.5
2409 Female, age 72, unknown 10.1
1941 Male, age 53, unknown 9.4
Superior colliculus
nTPM: 13.1
2087 Female, age 72, unknown 18.1
2261 Male, age 18, unknown 16.8
1796 Male, age 53, unknown 14.3
2587 Male, age 74, left hemisphere 13.3
1895 Male, age 76, right hemisphere 13.2
2664 Male, age 75, both hemispheres 12.3
1839 Male, age 51, unknown 12.2
2668 Female, age 75, unknown 10.5
1913 Female, age 42, unknown 10.1
1995 Male, age 72, unknown 10.1
Ventral tegmental area
nTPM: 11.8
2223 Female, age 72, unknown 12.6
2410 Female, age 72, unknown 12.6
1915 Female, age 42, unknown 12.5
2218 Male, age 76, both hemispheres 11.5
1942 Male, age 51, unknown 10.9
2021 Male, age 53, unknown 10.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 14.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.2
Samples: 183

Max nTPM: 36.0
Min nTPM: 3.0
Std nTPM: 5.8
Median nTPM: 13.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 36.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 33.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 32.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 31.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 31.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 28.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 28.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 26.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 26.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 26.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 25.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.7
FF:10158-103A5 76 years, female 2.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 49.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.2
Samples: 4

Max nTPM: 53.3
Min nTPM: 46.0
Sample A Male 53.3
Sample B Male 50.8
Sample C Female 46.7
Sample D Female 46.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
564752 Antisense, RP_040826_01_C07, Mouse strain C57BL/6J (56 days, male) 0.3

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