A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.3
nTPM
Monaco:
500.2
nTPM
Schmiedel:
29.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.3
HPA sample
nTPM
Memory B-cell nTPM: 25.3
Samples: 6
Max nTPM: 43.8
Min nTPM: 0.1
P10809_1017
43.8
P10809_1025
34.3
P10809_1044
0.1
P10809_1063
14.7
P10809_1092
32.9
P10809_1105
26.3
Naive B-cell nTPM: 18.5
Samples: 6
Max nTPM: 25.5
Min nTPM: 11.4
P10809_1011
15.7
P10809_1029
15.5
P10809_1048
21.2
P10809_1067
11.4
P10809_1091
21.5
P10809_1104
25.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
500.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 90.4
Samples: 4
Max nTPM: 140.2
Min nTPM: 60.3
RHH5310_R3677
140.2
RHH5218_R3590
69.9
RHH5247_R3619
60.3
RHH5276_R3648
91.4
Naive B-cell nTPM: 48.3
Samples: 4
Max nTPM: 56.7
Min nTPM: 45.0
RHH5308_R3675
46.0
RHH5216_R3588
56.7
RHH5245_R3617
45.0
RHH5274_R3646
45.5
Non-switched memory B-cell nTPM: 84.3
Samples: 4
Max nTPM: 111.5
Min nTPM: 62.3
RHH5309_R3676
93.1
RHH5217_R3589
111.5
RHH5246_R3618
62.3
RHH5275_R3647
70.4
Plasmablast nTPM: 500.2
Samples: 4
Max nTPM: 555.9
Min nTPM: 434.1
RHH5312_R3679
525.0
RHH5220_R3592
555.9
RHH5249_R3621
434.1
RHH5278_R3650
485.8
Switched memory B-cell nTPM: 82.2
Samples: 4
Max nTPM: 95.2
Min nTPM: 70.8
RHH5311_R3678
95.2
RHH5219_R3591
90.1
RHH5248_R3620
72.6
RHH5277_R3649
70.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.9
Schmiedel sample id
TPM
Naive B-cell TPM: 29.9
Samples: 91
Max TPM: 52.3
Min TPM: 10.3
B_CELL_NAIVE_1
52.3
B_CELL_NAIVE_2
48.6
B_CELL_NAIVE_3
43.7
B_CELL_NAIVE_4
43.6
B_CELL_NAIVE_5
43.0
B_CELL_NAIVE_6
42.2
B_CELL_NAIVE_7
41.7
B_CELL_NAIVE_8
40.6
B_CELL_NAIVE_9
39.8
B_CELL_NAIVE_10
39.7
B_CELL_NAIVE_11
39.7
B_CELL_NAIVE_12
39.1
B_CELL_NAIVE_13
38.3
B_CELL_NAIVE_14
38.3
B_CELL_NAIVE_15
38.3
B_CELL_NAIVE_16
38.3
B_CELL_NAIVE_17
37.1
B_CELL_NAIVE_18
36.9
B_CELL_NAIVE_19
36.7
B_CELL_NAIVE_20
36.6
B_CELL_NAIVE_21
36.6
B_CELL_NAIVE_22
36.5
B_CELL_NAIVE_23
36.5
B_CELL_NAIVE_24
36.2
B_CELL_NAIVE_25
35.9
B_CELL_NAIVE_26
35.3
B_CELL_NAIVE_27
35.2
B_CELL_NAIVE_28
35.1
B_CELL_NAIVE_29
34.4
B_CELL_NAIVE_30
33.8
B_CELL_NAIVE_31
33.5
B_CELL_NAIVE_32
33.4
B_CELL_NAIVE_33
33.3
B_CELL_NAIVE_34
33.2
B_CELL_NAIVE_35
32.6
B_CELL_NAIVE_36
32.4
B_CELL_NAIVE_37
32.0
B_CELL_NAIVE_38
31.5
B_CELL_NAIVE_39
31.5
B_CELL_NAIVE_40
31.4
B_CELL_NAIVE_41
31.1
B_CELL_NAIVE_42
30.8
B_CELL_NAIVE_43
30.8
B_CELL_NAIVE_44
30.7
B_CELL_NAIVE_45
30.6
B_CELL_NAIVE_46
30.5
B_CELL_NAIVE_47
30.3
B_CELL_NAIVE_48
30.3
B_CELL_NAIVE_49
30.3
B_CELL_NAIVE_50
29.9
B_CELL_NAIVE_51
29.7
B_CELL_NAIVE_52
29.5
B_CELL_NAIVE_53
29.4
B_CELL_NAIVE_54
29.2
B_CELL_NAIVE_55
29.2
B_CELL_NAIVE_56
28.7
B_CELL_NAIVE_57
28.2
B_CELL_NAIVE_58
28.0
B_CELL_NAIVE_59
28.0
B_CELL_NAIVE_60
27.7
B_CELL_NAIVE_61
27.4
B_CELL_NAIVE_62
27.1
B_CELL_NAIVE_63
27.1
B_CELL_NAIVE_64
26.8
B_CELL_NAIVE_65
26.4
B_CELL_NAIVE_66
26.4
B_CELL_NAIVE_67
26.1
B_CELL_NAIVE_68
25.1
B_CELL_NAIVE_69
24.7
B_CELL_NAIVE_70
23.4
B_CELL_NAIVE_71
22.6
B_CELL_NAIVE_72
22.6
B_CELL_NAIVE_73
22.1
B_CELL_NAIVE_74
21.8
B_CELL_NAIVE_75
21.6
B_CELL_NAIVE_76
20.7
B_CELL_NAIVE_77
20.6
B_CELL_NAIVE_78
20.4
B_CELL_NAIVE_79
19.6
B_CELL_NAIVE_80
18.9
B_CELL_NAIVE_81
18.6
B_CELL_NAIVE_82
17.6
B_CELL_NAIVE_83
16.9
B_CELL_NAIVE_84
16.3
B_CELL_NAIVE_85
15.8
B_CELL_NAIVE_86
15.8
B_CELL_NAIVE_87
15.2
B_CELL_NAIVE_88
13.6
B_CELL_NAIVE_89
12.1
B_CELL_NAIVE_90
10.8
B_CELL_NAIVE_91
10.3
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