A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
64.8
nTPM
Monaco:
135.4
nTPM
Schmiedel:
61.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
64.8
HPA sample
nTPM
Classical monocyte nTPM: 45.2
Samples: 6
Max nTPM: 55.3
Min nTPM: 27.9
P10809_1003
53.9
P10809_1020
44.1
P10809_1039
42.9
P10809_1058
27.9
P10809_1080
55.3
P10809_1107
47.3
Intermediate monocyte nTPM: 64.8
Samples: 6
Max nTPM: 98.7
Min nTPM: 51.9
P10809_1004
61.8
P10809_1023
51.9
P10809_1042
98.7
P10809_1061
52.4
P10809_1081
60.1
P10809_1108
63.7
Non-classical monocyte nTPM: 57.5
Samples: 5
Max nTPM: 67.6
Min nTPM: 47.2
P10809_1005
57.7
P10809_1053
67.6
P10809_1072
52.6
P10809_1082
47.2
P10809_1109
62.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.4
Monaco sample
nTPM
Classical monocyte nTPM: 102.3
Samples: 4
Max nTPM: 142.9
Min nTPM: 78.6
RHH5313_R3680
100.1
RHH5221_R3593
142.9
RHH5250_R3622
78.6
RHH5279_R3651
87.4
Intermediate monocyte nTPM: 135.4
Samples: 4
Max nTPM: 160.2
Min nTPM: 121.8
RHH5314_R3681
126.1
RHH5222_R3594
160.2
RHH5251_R3623
121.8
RHH5280_R3652
133.5
Non-classical monocyte nTPM: 132.4
Samples: 4
Max nTPM: 146.9
Min nTPM: 116.7
RHH5315_R3682
136.0
RHH5223_R3595
146.9
RHH5252_R3624
130.1
RHH5281_R3653
116.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
61.7
Schmiedel sample id
TPM
Classical monocyte TPM: 40.6
Samples: 91
Max TPM: 60.6
Min TPM: 23.0
MONOCYTES_1
60.6
MONOCYTES_2
60.4
MONOCYTES_3
57.8
MONOCYTES_4
56.6
MONOCYTES_5
56.3
MONOCYTES_6
55.9
MONOCYTES_7
54.4
MONOCYTES_8
54.1
MONOCYTES_9
53.5
MONOCYTES_10
53.2
MONOCYTES_11
52.8
MONOCYTES_12
52.3
MONOCYTES_13
51.2
MONOCYTES_14
51.0
MONOCYTES_15
50.4
MONOCYTES_16
49.8
MONOCYTES_17
49.1
MONOCYTES_18
48.9
MONOCYTES_19
48.8
MONOCYTES_20
48.7
MONOCYTES_21
48.1
MONOCYTES_22
46.7
MONOCYTES_23
46.6
MONOCYTES_24
46.0
MONOCYTES_25
46.0
MONOCYTES_26
45.4
MONOCYTES_27
45.2
MONOCYTES_28
45.0
MONOCYTES_29
44.2
MONOCYTES_30
43.6
MONOCYTES_31
43.3
MONOCYTES_32
42.9
MONOCYTES_33
42.8
MONOCYTES_34
42.7
MONOCYTES_35
42.6
MONOCYTES_36
41.8
MONOCYTES_37
41.8
MONOCYTES_38
41.3
MONOCYTES_39
41.1
MONOCYTES_40
40.6
MONOCYTES_41
40.4
MONOCYTES_42
40.0
MONOCYTES_43
40.0
MONOCYTES_44
39.9
MONOCYTES_45
39.8
MONOCYTES_46
38.9
MONOCYTES_47
38.9
MONOCYTES_48
38.8
MONOCYTES_49
38.3
MONOCYTES_50
38.2
MONOCYTES_51
38.1
MONOCYTES_52
37.9
MONOCYTES_53
37.7
MONOCYTES_54
37.6
MONOCYTES_55
37.5
MONOCYTES_56
37.4
MONOCYTES_57
37.3
MONOCYTES_58
36.9
MONOCYTES_59
36.9
MONOCYTES_60
36.9
MONOCYTES_61
36.9
MONOCYTES_62
36.3
MONOCYTES_63
36.2
MONOCYTES_64
36.2
MONOCYTES_65
36.1
MONOCYTES_66
35.5
MONOCYTES_67
35.0
MONOCYTES_68
35.0
MONOCYTES_69
34.5
MONOCYTES_70
34.3
MONOCYTES_71
34.0
MONOCYTES_72
34.0
MONOCYTES_73
34.0
MONOCYTES_74
32.8
MONOCYTES_75
32.3
MONOCYTES_76
32.1
MONOCYTES_77
31.9
MONOCYTES_78
31.4
MONOCYTES_79
31.2
MONOCYTES_80
31.1
MONOCYTES_81
31.0
MONOCYTES_82
30.4
MONOCYTES_83
29.4
MONOCYTES_84
29.0
MONOCYTES_85
28.6
MONOCYTES_86
28.5
MONOCYTES_87
28.1
MONOCYTES_88
27.5
MONOCYTES_89
26.2
MONOCYTES_90
23.1
MONOCYTES_91
23.0
Show allShow less
Non-classical monocyte TPM: 61.7
Samples: 90
Max TPM: 102.3
Min TPM: 27.3
M2_1
102.3
M2_2
95.2
M2_3
89.9
M2_4
88.6
M2_5
86.4
M2_6
86.2
M2_7
86.0
M2_8
83.3
M2_9
82.0
M2_10
81.5
M2_11
80.3
M2_12
79.9
M2_13
78.9
M2_14
77.3
M2_15
76.3
M2_16
75.3
M2_17
75.2
M2_18
74.9
M2_19
74.8
M2_20
74.8
M2_21
74.7
M2_22
74.6
M2_23
73.4
M2_24
73.1
M2_25
72.6
M2_26
72.0
M2_27
71.9
M2_28
70.7
M2_29
70.6
M2_30
70.5
M2_31
68.8
M2_32
68.7
M2_33
68.0
M2_34
65.7
M2_35
65.4
M2_36
65.0
M2_37
64.4
M2_38
62.3
M2_39
62.0
M2_40
61.5
M2_41
61.4
M2_42
60.9
M2_43
60.7
M2_44
60.4
M2_45
59.9
M2_46
59.9
M2_47
59.5
M2_48
58.8
M2_49
58.8
M2_50
58.8
M2_51
58.2
M2_52
57.7
M2_53
57.6
M2_54
56.9
M2_55
56.8
M2_56
56.4
M2_57
56.4
M2_58
56.0
M2_59
55.7
M2_60
55.6
M2_61
55.4
M2_62
55.2
M2_63
53.8
M2_64
53.6
M2_65
53.3
M2_66
53.2
M2_67
52.9
M2_68
52.9
M2_69
52.5
M2_70
52.2
M2_71
51.8
M2_72
51.1
M2_73
50.1
M2_74
49.9
M2_75
49.4
M2_76
46.7
M2_77
44.8
M2_78
43.9
M2_79
43.8
M2_80
43.0
M2_81
39.5
M2_82
39.2
M2_83
37.3
M2_84
37.2
M2_85
36.8
M2_86
35.0
M2_87
34.8
M2_88
31.0
M2_89
29.7
M2_90
27.3
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
