A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.7
nTPM
Monaco:
71.8
nTPM
Schmiedel:
18.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.7
HPA sample
nTPM
Memory B-cell nTPM: 17.6
Samples: 6
Max nTPM: 22.1
Min nTPM: 9.3
P10809_1017
20.1
P10809_1025
16.6
P10809_1044
9.3
P10809_1063
19.5
P10809_1092
18.2
P10809_1105
22.1
Naive B-cell nTPM: 24.7
Samples: 6
Max nTPM: 57.8
Min nTPM: 15.7
P10809_1011
16.8
P10809_1029
18.3
P10809_1048
57.8
P10809_1067
16.1
P10809_1091
15.7
P10809_1104
23.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 48.1
Samples: 4
Max nTPM: 61.9
Min nTPM: 38.5
RHH5310_R3677
61.9
RHH5218_R3590
49.3
RHH5247_R3619
42.6
RHH5276_R3648
38.5
Naive B-cell nTPM: 33.8
Samples: 4
Max nTPM: 39.0
Min nTPM: 26.4
RHH5308_R3675
38.5
RHH5216_R3588
39.0
RHH5245_R3617
31.2
RHH5274_R3646
26.4
Non-switched memory B-cell nTPM: 46.5
Samples: 4
Max nTPM: 55.4
Min nTPM: 38.0
RHH5309_R3676
55.4
RHH5217_R3589
41.0
RHH5246_R3618
51.6
RHH5275_R3647
38.0
Plasmablast nTPM: 71.8
Samples: 4
Max nTPM: 74.3
Min nTPM: 65.8
RHH5312_R3679
74.3
RHH5220_R3592
73.5
RHH5249_R3621
73.6
RHH5278_R3650
65.8
Switched memory B-cell nTPM: 41.8
Samples: 4
Max nTPM: 49.3
Min nTPM: 30.2
RHH5311_R3678
49.3
RHH5219_R3591
43.0
RHH5248_R3620
30.2
RHH5277_R3649
44.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.6
Schmiedel sample id
TPM
Naive B-cell TPM: 18.6
Samples: 91
Max TPM: 28.8
Min TPM: 7.2
B_CELL_NAIVE_1
28.8
B_CELL_NAIVE_2
28.5
B_CELL_NAIVE_3
25.4
B_CELL_NAIVE_4
24.9
B_CELL_NAIVE_5
24.3
B_CELL_NAIVE_6
24.3
B_CELL_NAIVE_7
23.8
B_CELL_NAIVE_8
23.8
B_CELL_NAIVE_9
23.8
B_CELL_NAIVE_10
23.5
B_CELL_NAIVE_11
23.5
B_CELL_NAIVE_12
23.3
B_CELL_NAIVE_13
23.1
B_CELL_NAIVE_14
23.1
B_CELL_NAIVE_15
23.0
B_CELL_NAIVE_16
22.7
B_CELL_NAIVE_17
22.7
B_CELL_NAIVE_18
22.7
B_CELL_NAIVE_19
22.7
B_CELL_NAIVE_20
22.5
B_CELL_NAIVE_21
22.5
B_CELL_NAIVE_22
22.4
B_CELL_NAIVE_23
22.4
B_CELL_NAIVE_24
22.3
B_CELL_NAIVE_25
21.8
B_CELL_NAIVE_26
21.6
B_CELL_NAIVE_27
21.6
B_CELL_NAIVE_28
21.6
B_CELL_NAIVE_29
21.5
B_CELL_NAIVE_30
21.5
B_CELL_NAIVE_31
21.4
B_CELL_NAIVE_32
21.3
B_CELL_NAIVE_33
20.6
B_CELL_NAIVE_34
20.6
B_CELL_NAIVE_35
20.6
B_CELL_NAIVE_36
20.5
B_CELL_NAIVE_37
20.5
B_CELL_NAIVE_38
20.0
B_CELL_NAIVE_39
20.0
B_CELL_NAIVE_40
19.9
B_CELL_NAIVE_41
19.8
B_CELL_NAIVE_42
19.6
B_CELL_NAIVE_43
19.5
B_CELL_NAIVE_44
19.5
B_CELL_NAIVE_45
19.4
B_CELL_NAIVE_46
19.3
B_CELL_NAIVE_47
19.3
B_CELL_NAIVE_48
19.1
B_CELL_NAIVE_49
18.9
B_CELL_NAIVE_50
18.9
B_CELL_NAIVE_51
18.7
B_CELL_NAIVE_52
18.6
B_CELL_NAIVE_53
18.4
B_CELL_NAIVE_54
18.1
B_CELL_NAIVE_55
17.9
B_CELL_NAIVE_56
17.8
B_CELL_NAIVE_57
17.1
B_CELL_NAIVE_58
17.0
B_CELL_NAIVE_59
16.8
B_CELL_NAIVE_60
16.8
B_CELL_NAIVE_61
16.8
B_CELL_NAIVE_62
16.8
B_CELL_NAIVE_63
16.6
B_CELL_NAIVE_64
16.5
B_CELL_NAIVE_65
16.4
B_CELL_NAIVE_66
16.4
B_CELL_NAIVE_67
16.1
B_CELL_NAIVE_68
16.0
B_CELL_NAIVE_69
15.9
B_CELL_NAIVE_70
15.8
B_CELL_NAIVE_71
15.7
B_CELL_NAIVE_72
15.2
B_CELL_NAIVE_73
14.7
B_CELL_NAIVE_74
14.2
B_CELL_NAIVE_75
14.1
B_CELL_NAIVE_76
14.0
B_CELL_NAIVE_77
14.0
B_CELL_NAIVE_78
13.6
B_CELL_NAIVE_79
13.3
B_CELL_NAIVE_80
12.2
B_CELL_NAIVE_81
12.1
B_CELL_NAIVE_82
12.0
B_CELL_NAIVE_83
11.6
B_CELL_NAIVE_84
11.3
B_CELL_NAIVE_85
10.9
B_CELL_NAIVE_86
9.6
B_CELL_NAIVE_87
9.5
B_CELL_NAIVE_88
8.7
B_CELL_NAIVE_89
8.6
B_CELL_NAIVE_90
7.9
B_CELL_NAIVE_91
7.2
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The Human Protein Atlas project is funded
