A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.4
nTPM
Monaco:
63.3
nTPM
Schmiedel:
20.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.4
HPA sample
nTPM
Classical monocyte nTPM: 23.1
Samples: 6
Max nTPM: 29.1
Min nTPM: 16.2
P10809_1003
28.3
P10809_1020
29.1
P10809_1039
18.0
P10809_1058
16.2
P10809_1080
22.7
P10809_1107
24.5
Intermediate monocyte nTPM: 23.3
Samples: 6
Max nTPM: 38.5
Min nTPM: 14.8
P10809_1004
38.5
P10809_1023
22.3
P10809_1042
16.8
P10809_1061
25.3
P10809_1081
14.8
P10809_1108
21.9
Non-classical monocyte nTPM: 24.4
Samples: 5
Max nTPM: 29.7
Min nTPM: 15.3
P10809_1005
29.7
P10809_1053
28.5
P10809_1072
25.8
P10809_1082
15.3
P10809_1109
22.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.3
Monaco sample
nTPM
Classical monocyte nTPM: 61.7
Samples: 4
Max nTPM: 75.4
Min nTPM: 52.1
RHH5313_R3680
52.1
RHH5221_R3593
60.6
RHH5250_R3622
75.4
RHH5279_R3651
58.6
Intermediate monocyte nTPM: 58.3
Samples: 4
Max nTPM: 74.9
Min nTPM: 43.7
RHH5314_R3681
43.7
RHH5222_R3594
74.9
RHH5251_R3623
53.4
RHH5280_R3652
61.0
Non-classical monocyte nTPM: 63.3
Samples: 4
Max nTPM: 69.3
Min nTPM: 53.8
RHH5315_R3682
67.7
RHH5223_R3595
53.8
RHH5252_R3624
62.2
RHH5281_R3653
69.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.9
Schmiedel sample id
TPM
Classical monocyte TPM: 18.1
Samples: 91
Max TPM: 26.4
Min TPM: 11.6
MONOCYTES_1
26.4
MONOCYTES_2
25.3
MONOCYTES_3
23.9
MONOCYTES_4
23.9
MONOCYTES_5
23.4
MONOCYTES_6
23.1
MONOCYTES_7
23.0
MONOCYTES_8
22.7
MONOCYTES_9
22.6
MONOCYTES_10
22.6
MONOCYTES_11
22.2
MONOCYTES_12
22.0
MONOCYTES_13
21.7
MONOCYTES_14
21.7
MONOCYTES_15
21.4
MONOCYTES_16
21.4
MONOCYTES_17
21.1
MONOCYTES_18
21.1
MONOCYTES_19
20.9
MONOCYTES_20
20.9
MONOCYTES_21
20.7
MONOCYTES_22
20.6
MONOCYTES_23
20.6
MONOCYTES_24
20.5
MONOCYTES_25
20.3
MONOCYTES_26
20.2
MONOCYTES_27
20.2
MONOCYTES_28
20.2
MONOCYTES_29
20.1
MONOCYTES_30
20.0
MONOCYTES_31
19.5
MONOCYTES_32
19.4
MONOCYTES_33
19.3
MONOCYTES_34
19.2
MONOCYTES_35
19.2
MONOCYTES_36
19.0
MONOCYTES_37
18.9
MONOCYTES_38
18.8
MONOCYTES_39
18.8
MONOCYTES_40
18.4
MONOCYTES_41
18.4
MONOCYTES_42
18.4
MONOCYTES_43
18.3
MONOCYTES_44
18.3
MONOCYTES_45
18.2
MONOCYTES_46
18.2
MONOCYTES_47
18.1
MONOCYTES_48
17.8
MONOCYTES_49
17.8
MONOCYTES_50
17.8
MONOCYTES_51
17.7
MONOCYTES_52
17.6
MONOCYTES_53
17.5
MONOCYTES_54
17.4
MONOCYTES_55
17.2
MONOCYTES_56
17.0
MONOCYTES_57
16.8
MONOCYTES_58
16.7
MONOCYTES_59
16.7
MONOCYTES_60
16.5
MONOCYTES_61
16.3
MONOCYTES_62
16.2
MONOCYTES_63
16.2
MONOCYTES_64
16.0
MONOCYTES_65
15.9
MONOCYTES_66
15.9
MONOCYTES_67
15.9
MONOCYTES_68
15.8
MONOCYTES_69
15.7
MONOCYTES_70
15.5
MONOCYTES_71
15.2
MONOCYTES_72
15.2
MONOCYTES_73
15.1
MONOCYTES_74
14.8
MONOCYTES_75
14.8
MONOCYTES_76
14.6
MONOCYTES_77
14.4
MONOCYTES_78
14.4
MONOCYTES_79
14.0
MONOCYTES_80
13.9
MONOCYTES_81
13.7
MONOCYTES_82
13.6
MONOCYTES_83
13.5
MONOCYTES_84
13.5
MONOCYTES_85
13.3
MONOCYTES_86
13.0
MONOCYTES_87
12.7
MONOCYTES_88
12.6
MONOCYTES_89
12.5
MONOCYTES_90
11.8
MONOCYTES_91
11.6
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Non-classical monocyte TPM: 20.9
Samples: 90
Max TPM: 30.2
Min TPM: 11.0
M2_1
30.2
M2_2
28.9
M2_3
28.9
M2_4
28.9
M2_5
28.2
M2_6
27.4
M2_7
26.9
M2_8
26.9
M2_9
26.6
M2_10
26.4
M2_11
26.4
M2_12
26.1
M2_13
26.1
M2_14
26.0
M2_15
25.9
M2_16
25.7
M2_17
25.5
M2_18
25.4
M2_19
25.2
M2_20
25.1
M2_21
25.0
M2_22
24.9
M2_23
24.9
M2_24
24.6
M2_25
24.5
M2_26
24.4
M2_27
24.2
M2_28
24.2
M2_29
24.1
M2_30
23.9
M2_31
23.7
M2_32
23.5
M2_33
23.2
M2_34
22.9
M2_35
22.7
M2_36
22.5
M2_37
22.5
M2_38
22.4
M2_39
22.3
M2_40
22.1
M2_41
22.1
M2_42
21.9
M2_43
21.5
M2_44
21.5
M2_45
21.3
M2_46
21.0
M2_47
21.0
M2_48
20.8
M2_49
20.7
M2_50
20.7
M2_51
20.6
M2_52
20.4
M2_53
20.3
M2_54
20.3
M2_55
20.0
M2_56
19.8
M2_57
19.5
M2_58
19.3
M2_59
19.3
M2_60
19.0
M2_61
19.0
M2_62
18.8
M2_63
18.2
M2_64
18.0
M2_65
17.6
M2_66
17.5
M2_67
17.3
M2_68
17.2
M2_69
17.2
M2_70
16.9
M2_71
16.4
M2_72
15.9
M2_73
15.8
M2_74
15.8
M2_75
15.8
M2_76
15.8
M2_77
15.4
M2_78
14.7
M2_79
14.7
M2_80
14.6
M2_81
14.2
M2_82
14.2
M2_83
14.1
M2_84
13.7
M2_85
13.6
M2_86
13.2
M2_87
12.6
M2_88
11.7
M2_89
11.1
M2_90
11.0
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