A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.6
nTPM
Monaco:
21.4
nTPM
Schmiedel:
38.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.6
HPA sample
nTPM
NK-cell nTPM: 14.6
Samples: 6
Max nTPM: 29.3
Min nTPM: 7.8
P10809_1013
7.8
P10809_1033
14.6
P10809_1052
15.6
P10809_1071
11.7
P10809_1093
29.3
P10809_1103
8.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.4
Monaco sample
nTPM
NK-cell nTPM: 21.5
Samples: 4
Max nTPM: 26.2
Min nTPM: 17.5
RHH5316_R3683
17.5
RHH5224_R3596
26.2
RHH5253_R3625
24.5
RHH5282_R3654
17.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.1
Schmiedel sample id
TPM
NK-cell TPM: 38.1
Samples: 90
Max TPM: 58.8
Min TPM: 23.5
NK_1
58.8
NK_2
56.1
NK_3
52.2
NK_4
50.1
NK_5
48.8
NK_6
48.8
NK_7
48.7
NK_8
48.5
NK_9
47.4
NK_10
47.1
NK_11
46.2
NK_12
46.0
NK_13
45.8
NK_14
45.4
NK_15
45.4
NK_16
45.2
NK_17
45.1
NK_18
44.3
NK_19
44.2
NK_20
43.9
NK_21
43.8
NK_22
43.6
NK_23
43.1
NK_24
42.7
NK_25
42.3
NK_26
42.0
NK_27
41.8
NK_28
41.7
NK_29
40.8
NK_30
40.8
NK_31
40.6
NK_32
40.4
NK_33
40.3
NK_34
40.3
NK_35
40.0
NK_36
39.6
NK_37
39.3
NK_38
39.2
NK_39
38.7
NK_40
38.1
NK_41
38.1
NK_42
37.9
NK_43
37.9
NK_44
37.6
NK_45
37.5
NK_46
37.5
NK_47
37.4
NK_48
36.7
NK_49
36.6
NK_50
36.3
NK_51
36.2
NK_52
36.1
NK_53
36.1
NK_54
35.6
NK_55
35.3
NK_56
35.1
NK_57
34.9
NK_58
34.3
NK_59
34.1
NK_60
33.7
NK_61
33.7
NK_62
33.5
NK_63
33.5
NK_64
33.4
NK_65
33.4
NK_66
33.3
NK_67
33.2
NK_68
33.1
NK_69
33.0
NK_70
32.5
NK_71
32.1
NK_72
32.0
NK_73
31.9
NK_74
31.9
NK_75
31.8
NK_76
31.6
NK_77
31.6
NK_78
31.1
NK_79
31.1
NK_80
31.1
NK_81
31.0
NK_82
29.6
NK_83
29.5
NK_84
29.4
NK_85
28.7
NK_86
27.4
NK_87
26.6
NK_88
25.7
NK_89
25.6
NK_90
23.5
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