A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.2
nTPM
Monaco:
20.4
nTPM
Schmiedel:
28.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.2
HPA sample
nTPM
Classical monocyte nTPM: 11.3
Samples: 6
Max nTPM: 15.9
Min nTPM: 7.7
P10809_1003
12.3
P10809_1020
15.9
P10809_1039
12.4
P10809_1058
7.7
P10809_1080
8.8
P10809_1107
10.8
Intermediate monocyte nTPM: 13.3
Samples: 6
Max nTPM: 17.2
Min nTPM: 9.2
P10809_1004
13.2
P10809_1023
14.5
P10809_1042
14.8
P10809_1061
17.2
P10809_1081
9.2
P10809_1108
10.7
Non-classical monocyte nTPM: 15.2
Samples: 5
Max nTPM: 36.8
Min nTPM: 6.0
P10809_1005
8.7
P10809_1053
13.3
P10809_1072
36.8
P10809_1082
6.0
P10809_1109
11.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.4
Monaco sample
nTPM
Classical monocyte nTPM: 20.4
Samples: 4
Max nTPM: 26.9
Min nTPM: 17.1
RHH5313_R3680
26.9
RHH5221_R3593
17.1
RHH5250_R3622
17.5
RHH5279_R3651
20.2
Intermediate monocyte nTPM: 19.5
Samples: 4
Max nTPM: 29.7
Min nTPM: 15.5
RHH5314_R3681
17.1
RHH5222_R3594
29.7
RHH5251_R3623
15.6
RHH5280_R3652
15.5
Non-classical monocyte nTPM: 20.4
Samples: 4
Max nTPM: 23.6
Min nTPM: 16.6
RHH5315_R3682
22.2
RHH5223_R3595
23.6
RHH5252_R3624
19.2
RHH5281_R3653
16.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.5
Schmiedel sample id
TPM
Classical monocyte TPM: 28.5
Samples: 91
Max TPM: 37.4
Min TPM: 19.9
MONOCYTES_1
37.4
MONOCYTES_2
37.2
MONOCYTES_3
36.0
MONOCYTES_4
35.4
MONOCYTES_5
35.4
MONOCYTES_6
35.1
MONOCYTES_7
34.9
MONOCYTES_8
34.8
MONOCYTES_9
33.4
MONOCYTES_10
33.2
MONOCYTES_11
33.0
MONOCYTES_12
32.8
MONOCYTES_13
32.5
MONOCYTES_14
32.4
MONOCYTES_15
32.3
MONOCYTES_16
32.0
MONOCYTES_17
31.7
MONOCYTES_18
31.2
MONOCYTES_19
31.0
MONOCYTES_20
30.7
MONOCYTES_21
30.6
MONOCYTES_22
30.6
MONOCYTES_23
30.5
MONOCYTES_24
30.5
MONOCYTES_25
30.3
MONOCYTES_26
30.2
MONOCYTES_27
30.1
MONOCYTES_28
30.0
MONOCYTES_29
30.0
MONOCYTES_30
29.9
MONOCYTES_31
29.8
MONOCYTES_32
29.7
MONOCYTES_33
29.7
MONOCYTES_34
29.5
MONOCYTES_35
29.5
MONOCYTES_36
29.4
MONOCYTES_37
29.3
MONOCYTES_38
29.3
MONOCYTES_39
29.2
MONOCYTES_40
29.2
MONOCYTES_41
29.2
MONOCYTES_42
29.1
MONOCYTES_43
29.0
MONOCYTES_44
28.8
MONOCYTES_45
28.8
MONOCYTES_46
28.6
MONOCYTES_47
28.3
MONOCYTES_48
28.3
MONOCYTES_49
28.2
MONOCYTES_50
28.1
MONOCYTES_51
28.1
MONOCYTES_52
28.1
MONOCYTES_53
28.1
MONOCYTES_54
28.0
MONOCYTES_55
27.8
MONOCYTES_56
27.6
MONOCYTES_57
27.6
MONOCYTES_58
27.4
MONOCYTES_59
27.2
MONOCYTES_60
27.0
MONOCYTES_61
26.7
MONOCYTES_62
26.7
MONOCYTES_63
26.6
MONOCYTES_64
26.5
MONOCYTES_65
26.4
MONOCYTES_66
26.4
MONOCYTES_67
26.3
MONOCYTES_68
26.0
MONOCYTES_69
25.9
MONOCYTES_70
25.9
MONOCYTES_71
25.8
MONOCYTES_72
25.8
MONOCYTES_73
25.7
MONOCYTES_74
25.7
MONOCYTES_75
25.5
MONOCYTES_76
25.0
MONOCYTES_77
24.9
MONOCYTES_78
24.9
MONOCYTES_79
24.7
MONOCYTES_80
24.7
MONOCYTES_81
24.6
MONOCYTES_82
24.1
MONOCYTES_83
23.8
MONOCYTES_84
23.8
MONOCYTES_85
23.8
MONOCYTES_86
23.6
MONOCYTES_87
23.2
MONOCYTES_88
20.8
MONOCYTES_89
20.6
MONOCYTES_90
20.0
MONOCYTES_91
19.9
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Non-classical monocyte TPM: 22.6
Samples: 90
Max TPM: 29.6
Min TPM: 15.3
M2_1
29.6
M2_2
28.4
M2_3
27.8
M2_4
27.6
M2_5
27.1
M2_6
27.0
M2_7
26.7
M2_8
26.0
M2_9
26.0
M2_10
25.9
M2_11
25.8
M2_12
25.8
M2_13
25.6
M2_14
25.5
M2_15
25.4
M2_16
25.0
M2_17
24.9
M2_18
24.9
M2_19
24.6
M2_20
24.5
M2_21
24.4
M2_22
24.4
M2_23
24.3
M2_24
24.3
M2_25
24.2
M2_26
24.2
M2_27
24.0
M2_28
23.8
M2_29
23.8
M2_30
23.8
M2_31
23.8
M2_32
23.7
M2_33
23.6
M2_34
23.6
M2_35
23.4
M2_36
23.2
M2_37
23.1
M2_38
23.0
M2_39
22.9
M2_40
22.8
M2_41
22.8
M2_42
22.8
M2_43
22.8
M2_44
22.7
M2_45
22.7
M2_46
22.7
M2_47
22.6
M2_48
22.5
M2_49
22.5
M2_50
22.4
M2_51
22.4
M2_52
22.3
M2_53
22.3
M2_54
22.3
M2_55
22.3
M2_56
22.2
M2_57
22.1
M2_58
21.9
M2_59
21.9
M2_60
21.8
M2_61
21.8
M2_62
21.7
M2_63
21.7
M2_64
21.7
M2_65
21.7
M2_66
21.7
M2_67
21.5
M2_68
21.5
M2_69
21.1
M2_70
21.0
M2_71
20.7
M2_72
20.5
M2_73
20.4
M2_74
20.4
M2_75
20.1
M2_76
19.5
M2_77
19.4
M2_78
19.4
M2_79
19.4
M2_80
19.1
M2_81
19.0
M2_82
18.9
M2_83
18.8
M2_84
18.4
M2_85
18.3
M2_86
17.9
M2_87
17.6
M2_88
16.4
M2_89
15.9
M2_90
15.3
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