HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:42.7 nTPM
HPA Brain:85.5 nTPM
GTEx:42.7 nTPM
FANTOM5:47.9 Scaled Tags Per Million
Pig:17.1 nTPM
Mouse:9.0 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA000271Antibody CAB022159
Glial cells Not detectedHigh
Neuronal cells Not detectedMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 85.5
Sample id Sample description nTPM
Hippocampus
nTPM: 65.5
2529 Female, age 94, left hemisphere 74.5
2621 Female, age 67, right hemisphere 71.1
1855 Male, age 76, left hemisphere 69.3
1911 Female, age 85, right hemisphere 62.9
1898 Male, age 80, left hemisphere 59.5
2148 Female, age 91, left hemisphere 56.0
Dentate gyrus
nTPM: 65.4
2530 Female, age 94, left hemisphere 89.8
2010 Male, age 76, both hemispheres 87.0
2531 Female, age 67, both hemispheres 66.5
2246 Female, age 85, both hemispheres 56.6
2528 Male, age 74, both hemispheres 51.3
1927 Female, age 91, both hemispheres 41.0
Entorhinal gyrus
nTPM: 83.2
2686 Male, age 75, right hemisphere 113.8
2117 Female, age 91, right hemisphere 96.7
2613 Female, age 94, left hemisphere 80.3
2764 Male, age 80, right hemisphere 78.8
1938 Female, age 85, left hemisphere 64.7
1787 Male, age 76, left hemisphere 64.6
Hippocampus, CA1
nTPM: 59.1
2082 Female, age 91, right hemisphere 66.3
2045 Male, age 76, both hemispheres 59.7
2527 Male, age 74, both hemispheres 59.0
1873 Female, age 85, both hemispheres 55.9
2749 Male, age 80, left hemisphere 54.7
Hippocampus, CA2
nTPM: 63.7
1963 Male, age 80, left hemisphere 77.5
2113 Female, age 91, right hemisphere 71.7
2437 Female, age 94, left hemisphere 70.3
1940 Female, age 85, left hemisphere 59.1
2249 Male, age 74, both hemispheres 56.0
1892 Male, age 76, both hemispheres 47.5
Hippocampus, CA3
nTPM: 52.1
1891 Female, age 85, both hemispheres 79.2
1867 Male, age 76, both hemispheres 62.0
2861 Female, age 67, both hemispheres 54.9
2137 Male, age 80, left hemisphere 44.4
2436 Male, age 74, both hemispheres 40.6
2620 Female, age 94, left hemisphere 31.7
Parahippocampal cortex
nTPM: 66.1
2692 Male, age 74, both hemispheres 89.7
2018 Male, age 76, both hemispheres 78.4
2532 Female, age 72, left hemisphere 77.0
2622 Female, age 67, right hemisphere 70.8
1990 Female, age 91, right hemisphere 66.7
1850 Male, age 80, both hemispheres 65.4
2245 Female, age 91, both hemispheres 59.3
1933 Female, age 85, both hemispheres 56.6
2693 Female, age 94, both hemispheres 51.1
2250 Female, age 67, right hemisphere 45.5
Perirhinal gyrus
nTPM: 49.0
2848 Male, age 76, right hemisphere 55.8
1847 Female, age 91, left hemisphere 55.0
1794 Male, age 80, right hemisphere 49.9
1841 Female, age 85, right hemisphere 43.4
2521 Female, age 94, right hemisphere 41.0
Subiculum
nTPM: 85.5
2042 Male, age 76, both hemispheres 111.5
2438 Female, age 94, left hemisphere 104.4
1901 Male, age 80, both hemispheres 87.6
1977 Female, age 85, both hemispheres 74.4
2619 Male, age 74, both hemispheres 68.4
2729 Female, age 91, right hemisphere 66.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 42.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.7
Samples: 255

Max nTPM: 176.5
Min nTPM: 11.6
Std nTPM: 24.2
Median nTPM: 36.3
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 176.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 156.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 126.1
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 119.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 114.4
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 109.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 103.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 103.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 100.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 96.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 96.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 47.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.9
FF:10153-102I9 76 years, female 74.0
FF:10169-103B7 60 years, female 21.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 17.1
Pig sample Sample description nTPM
Subiculum
nTPM: 10.9
Samples: 4

Max nTPM: 13.1
Min nTPM: 9.8
Sample A Female 13.1
Sample B Female 10.0
Sample C Male 9.8
Sample D Male 10.5
Dorsal hippocampus
nTPM: 17.1
Samples: 4

Max nTPM: 22.0
Min nTPM: 11.8
Sample A Female 22.0
Sample B Female 14.1
Sample C Male 20.5
Sample D Male 11.8
Entorhinal cortex
nTPM: 8.4
Samples: 4

Max nTPM: 8.8
Min nTPM: 8.0
Sample A Female 8.7
Sample B Female 8.2
Sample C Male 8.8
Sample D Male 8.0
Ventral hippocampus
nTPM: 12.6
Samples: 4

Max nTPM: 15.1
Min nTPM: 8.1
Sample A Female 12.2
Sample B Female 8.1
Sample C Male 15.0
Sample D Male 15.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 9.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 9.0
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.7
Sample A Male 8.6
Sample B Male 7.7
Sample C Female 8.2
Sample D Female 11.6
Hippocampal formation
nTPM: 6.9
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.5
Sample A Male 7.4
Sample B Male 7.1
Sample C Female 6.7
Sample D Female 6.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
69672701 Antisense, RP_050428_04_C12, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo