MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.4 nTPM
HPA Brain:131.3 nTPM
GTEx:33.4 nTPM
FANTOM5:137.0 Scaled Tags Per Million
Pig:118.6 nTPM
Mouse:159.2 nTPM
Allen mouse:3.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 131.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 95.7
2666 Male, age 74, left hemisphere 119.1
1827 Male, age 72, unknown 113.4
2411 Female, age 72, unknown 110.1
2219 Male, age 76, both hemispheres 100.8
2019 Male, age 18, unknown 98.3
1870 Female, age 42, unknown 90.5
2828 Female, age 72, unknown 84.2
2586 Male, age 75, left hemisphere 83.8
1833 Male, age 53, unknown 80.9
1830 Male, age 51, unknown 75.8
Dorsal raphe nucleus
nTPM: 100.0
2298 Female, age 72, unknown 129.8
2750 Male, age 76, both hemispheres 103.8
2047 Male, age 72, unknown 99.7
1828 Male, age 53, unknown 96.0
2016 Female, age 72, unknown 70.8
Inferior colliculus
nTPM: 90.8
2097 Female, age 72, unknown 111.9
1890 Male, age 53, unknown 86.7
1848 Female, age 42, unknown 84.5
2849 Male, age 72, unknown 80.3
Median raphe nucleus
nTPM: 131.3
2220 Male, age 76, midline 131.3
Periaquaductal grey, anterior
nTPM: 110.6
1947 Male, age 18, unknown 123.8
1795 Male, age 51, unknown 112.5
2502 Female, age 75, unknown 95.7
Periaquaductal grey, dorsal
nTPM: 80.0
1831 Male, age 72, unknown 88.0
1840 Male, age 53, unknown 86.0
2464 Female, age 72, unknown 75.0
2850 Male, age 76, both hemispheres 70.9
Periaquaductal grey, lateral
nTPM: 74.0
2053 Male, age 18, unknown 81.5
2272 Male, age 74, both hemispheres 77.4
2140 Male, age 76, both hemispheres 63.1
Pretectal area
nTPM: 114.4
1816 Male, age 51, unknown 153.6
1944 Female, age 72, unknown 146.6
1817 Female, age 42, unknown 143.2
2007 Male, age 72, unknown 143.1
1815 Male, age 53, unknown 131.5
2667 Female, age 75, unknown 120.7
2224 Female, age 72, unknown 102.0
2273 Male, age 74, both hemispheres 85.3
2407 Male, age 75, both hemispheres 85.0
2825 Male, age 18, unknown 83.9
2316 Male, age 76, right hemisphere 63.6
Red nucleus
nTPM: 83.3
1821 Female, age 72, unknown 108.7
2725 Female, age 75, unknown 105.3
2785 Male, age 18, unknown 94.2
2584 Male, age 75, left hemisphere 85.8
2503 Female, age 72, unknown 83.2
1954 Female, age 42, unknown 82.7
2588 Male, age 74, left hemisphere 80.1
1865 Male, age 51, unknown 76.6
1904 Male, age 53, unknown 75.2
2227 Male, age 72, unknown 71.5
2769 Male, age 72, unknown 69.9
2823 Male, age 76, right hemisphere 66.2
Substantia nigra
nTPM: 115.6
1916 Female, age 42, unknown 160.6
1889 Female, age 72, unknown 136.2
1941 Male, age 53, unknown 131.0
2241 Male, age 72, unknown 129.5
1851 Male, age 51, unknown 125.8
2409 Female, age 72, unknown 120.5
2665 Male, age 74, both hemispheres 97.3
2583 Male, age 75, right hemisphere 96.4
2699 Male, age 18, unknown 84.6
2590 Female, age 75, unknown 74.5
Superior colliculus
nTPM: 94.1
2087 Female, age 72, unknown 118.3
2668 Female, age 75, unknown 115.2
1796 Male, age 53, unknown 112.6
2261 Male, age 18, unknown 109.6
1895 Male, age 76, right hemisphere 86.6
1839 Male, age 51, unknown 86.2
2587 Male, age 74, left hemisphere 85.2
1913 Female, age 42, unknown 80.9
2664 Male, age 75, both hemispheres 76.1
1995 Male, age 72, unknown 70.2
Ventral tegmental area
nTPM: 109.9
2410 Female, age 72, unknown 136.7
2218 Male, age 76, both hemispheres 130.7
1915 Female, age 42, unknown 120.2
1942 Male, age 51, unknown 97.8
2223 Female, age 72, unknown 93.2
2021 Male, age 53, unknown 80.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 33.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.4
Samples: 183

Max nTPM: 118.2
Min nTPM: 8.5
Std nTPM: 21.0
Median nTPM: 25.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 118.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 108.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 105.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 104.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 97.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 85.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 85.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 81.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 81.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 78.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 78.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 137.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.0
FF:10158-103A5 76 years, female 137.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 118.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 116.7
Samples: 4

Max nTPM: 165.8
Min nTPM: 62.7
Sample A Female 153.6
Sample B Female 84.5
Sample C Male 165.8
Sample D Male 62.7
Midbrain
nTPM: 118.6
Samples: 4

Max nTPM: 176.6
Min nTPM: 72.1
Sample A Female 72.1
Sample B Female 92.8
Sample C Male 176.6
Sample D Male 132.8
Periaqueductal gray
nTPM: 92.4
Samples: 3

Max nTPM: 118.7
Min nTPM: 77.3
Sample B Female 81.1
Sample C Male 118.7
Sample D Male 77.3
Superior colliculi
nTPM: 113.9
Samples: 4

Max nTPM: 144.2
Min nTPM: 72.7
Sample A Female 120.7
Sample B Female 72.7
Sample C Male 144.2
Sample D Male 117.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 159.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 159.2
Samples: 4

Max nTPM: 175.3
Min nTPM: 140.8
Sample A Male 140.8
Sample B Male 161.3
Sample C Female 175.3
Sample D Female 159.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
126 Antisense, RP_Baylor_102642, Mouse strain C57BL/6J (56 days, male) 6.5
127 Antisense, RP_Baylor_102642, Mouse strain C57BL/6J (56 days, male) 1.1
128 Sense, RPS_Baylor_36955, Mouse strain C57BL/6J (56 days, male) 0.0

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