A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.5
nTPM
Monaco:
214.6
nTPM
Schmiedel:
27.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.5
HPA sample
nTPM
Memory B-cell nTPM: 33.4
Samples: 6
Max nTPM: 47.6
Min nTPM: 4.7
P10809_1017
47.6
P10809_1025
33.0
P10809_1044
4.7
P10809_1063
37.9
P10809_1092
30.6
P10809_1105
46.8
Naive B-cell nTPM: 25.6
Samples: 6
Max nTPM: 38.0
Min nTPM: 3.5
P10809_1011
36.6
P10809_1029
26.4
P10809_1048
3.5
P10809_1067
22.0
P10809_1091
27.0
P10809_1104
38.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
214.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 206.9
Samples: 4
Max nTPM: 277.2
Min nTPM: 171.3
RHH5310_R3677
171.3
RHH5218_R3590
277.2
RHH5247_R3619
173.6
RHH5276_R3648
205.3
Naive B-cell nTPM: 214.6
Samples: 4
Max nTPM: 287.8
Min nTPM: 154.0
RHH5308_R3675
154.0
RHH5216_R3588
287.8
RHH5245_R3617
176.0
RHH5274_R3646
240.8
Non-switched memory B-cell nTPM: 206.8
Samples: 4
Max nTPM: 252.9
Min nTPM: 155.1
RHH5309_R3676
201.4
RHH5217_R3589
252.9
RHH5246_R3618
155.1
RHH5275_R3647
217.9
Plasmablast nTPM: 162.7
Samples: 4
Max nTPM: 168.8
Min nTPM: 156.2
RHH5312_R3679
156.2
RHH5220_R3592
164.7
RHH5249_R3621
161.0
RHH5278_R3650
168.8
Switched memory B-cell nTPM: 198.9
Samples: 4
Max nTPM: 245.5
Min nTPM: 174.8
RHH5311_R3678
174.8
RHH5219_R3591
245.5
RHH5248_R3620
192.5
RHH5277_R3649
182.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.5
Schmiedel sample id
TPM
Naive B-cell TPM: 27.5
Samples: 91
Max TPM: 47.6
Min TPM: 9.1
B_CELL_NAIVE_1
47.6
B_CELL_NAIVE_2
44.4
B_CELL_NAIVE_3
44.3
B_CELL_NAIVE_4
41.8
B_CELL_NAIVE_5
40.5
B_CELL_NAIVE_6
40.3
B_CELL_NAIVE_7
40.3
B_CELL_NAIVE_8
40.2
B_CELL_NAIVE_9
39.5
B_CELL_NAIVE_10
39.5
B_CELL_NAIVE_11
39.0
B_CELL_NAIVE_12
37.4
B_CELL_NAIVE_13
37.2
B_CELL_NAIVE_14
37.1
B_CELL_NAIVE_15
37.1
B_CELL_NAIVE_16
36.8
B_CELL_NAIVE_17
36.7
B_CELL_NAIVE_18
36.3
B_CELL_NAIVE_19
36.2
B_CELL_NAIVE_20
36.1
B_CELL_NAIVE_21
35.8
B_CELL_NAIVE_22
35.5
B_CELL_NAIVE_23
35.4
B_CELL_NAIVE_24
35.2
B_CELL_NAIVE_25
33.7
B_CELL_NAIVE_26
33.6
B_CELL_NAIVE_27
33.1
B_CELL_NAIVE_28
32.6
B_CELL_NAIVE_29
32.4
B_CELL_NAIVE_30
32.3
B_CELL_NAIVE_31
31.7
B_CELL_NAIVE_32
31.1
B_CELL_NAIVE_33
31.1
B_CELL_NAIVE_34
30.8
B_CELL_NAIVE_35
30.4
B_CELL_NAIVE_36
30.1
B_CELL_NAIVE_37
30.1
B_CELL_NAIVE_38
30.0
B_CELL_NAIVE_39
29.4
B_CELL_NAIVE_40
29.4
B_CELL_NAIVE_41
29.2
B_CELL_NAIVE_42
29.0
B_CELL_NAIVE_43
29.0
B_CELL_NAIVE_44
28.8
B_CELL_NAIVE_45
28.7
B_CELL_NAIVE_46
28.1
B_CELL_NAIVE_47
27.7
B_CELL_NAIVE_48
27.0
B_CELL_NAIVE_49
26.9
B_CELL_NAIVE_50
26.5
B_CELL_NAIVE_51
26.4
B_CELL_NAIVE_52
26.4
B_CELL_NAIVE_53
26.1
B_CELL_NAIVE_54
26.0
B_CELL_NAIVE_55
24.7
B_CELL_NAIVE_56
24.3
B_CELL_NAIVE_57
24.2
B_CELL_NAIVE_58
24.0
B_CELL_NAIVE_59
23.9
B_CELL_NAIVE_60
23.8
B_CELL_NAIVE_61
23.7
B_CELL_NAIVE_62
22.8
B_CELL_NAIVE_63
22.6
B_CELL_NAIVE_64
22.3
B_CELL_NAIVE_65
21.4
B_CELL_NAIVE_66
21.3
B_CELL_NAIVE_67
20.5
B_CELL_NAIVE_68
20.5
B_CELL_NAIVE_69
19.7
B_CELL_NAIVE_70
19.4
B_CELL_NAIVE_71
19.4
B_CELL_NAIVE_72
19.1
B_CELL_NAIVE_73
19.0
B_CELL_NAIVE_74
18.9
B_CELL_NAIVE_75
18.8
B_CELL_NAIVE_76
18.6
B_CELL_NAIVE_77
17.2
B_CELL_NAIVE_78
16.9
B_CELL_NAIVE_79
16.8
B_CELL_NAIVE_80
16.8
B_CELL_NAIVE_81
16.5
B_CELL_NAIVE_82
16.4
B_CELL_NAIVE_83
16.3
B_CELL_NAIVE_84
15.5
B_CELL_NAIVE_85
15.2
B_CELL_NAIVE_86
13.1
B_CELL_NAIVE_87
11.7
B_CELL_NAIVE_88
11.2
B_CELL_NAIVE_89
10.7
B_CELL_NAIVE_90
9.9
B_CELL_NAIVE_91
9.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
