A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
105.3
nTPM
Monaco:
565.4
nTPM
Schmiedel:
166.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.3
HPA sample
nTPM
Classical monocyte nTPM: 49.5
Samples: 6
Max nTPM: 87.4
Min nTPM: 32.7
P10809_1003
87.4
P10809_1020
53.9
P10809_1039
32.7
P10809_1058
41.0
P10809_1080
39.0
P10809_1107
42.8
Intermediate monocyte nTPM: 72.2
Samples: 6
Max nTPM: 89.2
Min nTPM: 46.8
P10809_1004
71.6
P10809_1023
85.8
P10809_1042
89.2
P10809_1061
75.6
P10809_1081
46.8
P10809_1108
64.2
Non-classical monocyte nTPM: 105.3
Samples: 5
Max nTPM: 151.1
Min nTPM: 70.9
P10809_1005
114.4
P10809_1053
92.6
P10809_1072
151.1
P10809_1082
70.9
P10809_1109
97.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
565.4
Monaco sample
nTPM
Classical monocyte nTPM: 344.8
Samples: 4
Max nTPM: 437.4
Min nTPM: 256.9
RHH5313_R3680
312.2
RHH5221_R3593
437.4
RHH5250_R3622
372.5
RHH5279_R3651
256.9
Intermediate monocyte nTPM: 455.3
Samples: 4
Max nTPM: 591.6
Min nTPM: 356.3
RHH5314_R3681
356.3
RHH5222_R3594
447.7
RHH5251_R3623
591.6
RHH5280_R3652
425.6
Non-classical monocyte nTPM: 565.4
Samples: 4
Max nTPM: 634.4
Min nTPM: 524.7
RHH5315_R3682
564.5
RHH5223_R3595
524.7
RHH5252_R3624
634.4
RHH5281_R3653
537.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
166.5
Schmiedel sample id
TPM
Classical monocyte TPM: 129.2
Samples: 91
Max TPM: 213.4
Min TPM: 70.0
MONOCYTES_1
213.4
MONOCYTES_2
198.7
MONOCYTES_3
196.6
MONOCYTES_4
195.6
MONOCYTES_5
192.1
MONOCYTES_6
191.9
MONOCYTES_7
183.6
MONOCYTES_8
182.7
MONOCYTES_9
180.8
MONOCYTES_10
178.4
MONOCYTES_11
166.3
MONOCYTES_12
165.1
MONOCYTES_13
163.1
MONOCYTES_14
162.3
MONOCYTES_15
160.7
MONOCYTES_16
160.7
MONOCYTES_17
159.9
MONOCYTES_18
159.5
MONOCYTES_19
156.2
MONOCYTES_20
155.9
MONOCYTES_21
154.2
MONOCYTES_22
152.8
MONOCYTES_23
152.3
MONOCYTES_24
151.4
MONOCYTES_25
151.3
MONOCYTES_26
149.6
MONOCYTES_27
149.2
MONOCYTES_28
146.9
MONOCYTES_29
146.5
MONOCYTES_30
146.1
MONOCYTES_31
144.7
MONOCYTES_32
141.7
MONOCYTES_33
139.5
MONOCYTES_34
136.5
MONOCYTES_35
135.0
MONOCYTES_36
134.3
MONOCYTES_37
134.2
MONOCYTES_38
133.4
MONOCYTES_39
132.5
MONOCYTES_40
130.4
MONOCYTES_41
130.2
MONOCYTES_42
129.7
MONOCYTES_43
128.2
MONOCYTES_44
127.5
MONOCYTES_45
125.6
MONOCYTES_46
124.5
MONOCYTES_47
124.5
MONOCYTES_48
124.5
MONOCYTES_49
123.8
MONOCYTES_50
121.8
MONOCYTES_51
121.1
MONOCYTES_52
119.4
MONOCYTES_53
119.1
MONOCYTES_54
118.9
MONOCYTES_55
118.0
MONOCYTES_56
118.0
MONOCYTES_57
118.0
MONOCYTES_58
116.4
MONOCYTES_59
113.5
MONOCYTES_60
113.0
MONOCYTES_61
112.7
MONOCYTES_62
111.5
MONOCYTES_63
110.3
MONOCYTES_64
110.2
MONOCYTES_65
109.3
MONOCYTES_66
107.7
MONOCYTES_67
107.5
MONOCYTES_68
105.4
MONOCYTES_69
105.3
MONOCYTES_70
103.9
MONOCYTES_71
101.7
MONOCYTES_72
100.8
MONOCYTES_73
100.2
MONOCYTES_74
99.2
MONOCYTES_75
97.6
MONOCYTES_76
95.6
MONOCYTES_77
91.2
MONOCYTES_78
91.1
MONOCYTES_79
90.8
MONOCYTES_80
90.7
MONOCYTES_81
89.0
MONOCYTES_82
87.5
MONOCYTES_83
86.4
MONOCYTES_84
84.3
MONOCYTES_85
83.6
MONOCYTES_86
82.9
MONOCYTES_87
80.9
MONOCYTES_88
79.9
MONOCYTES_89
78.8
MONOCYTES_90
71.8
MONOCYTES_91
70.0
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Non-classical monocyte TPM: 166.5
Samples: 90
Max TPM: 253.9
Min TPM: 71.4
M2_1
253.9
M2_2
245.4
M2_3
236.7
M2_4
236.7
M2_5
234.9
M2_6
228.7
M2_7
227.1
M2_8
226.7
M2_9
221.1
M2_10
219.8
M2_11
219.7
M2_12
218.2
M2_13
217.7
M2_14
216.5
M2_15
216.1
M2_16
214.5
M2_17
214.1
M2_18
211.6
M2_19
209.2
M2_20
207.9
M2_21
205.9
M2_22
205.9
M2_23
205.5
M2_24
203.3
M2_25
199.3
M2_26
196.8
M2_27
194.6
M2_28
194.4
M2_29
194.2
M2_30
190.1
M2_31
190.1
M2_32
189.4
M2_33
189.2
M2_34
189.2
M2_35
189.1
M2_36
188.2
M2_37
188.1
M2_38
187.8
M2_39
183.6
M2_40
182.5
M2_41
178.6
M2_42
178.5
M2_43
176.8
M2_44
176.7
M2_45
174.0
M2_46
173.3
M2_47
169.1
M2_48
167.9
M2_49
166.5
M2_50
161.6
M2_51
160.1
M2_52
157.3
M2_53
157.1
M2_54
154.6
M2_55
152.4
M2_56
152.1
M2_57
150.7
M2_58
150.6
M2_59
149.4
M2_60
149.3
M2_61
149.0
M2_62
147.3
M2_63
145.7
M2_64
142.7
M2_65
140.5
M2_66
140.3
M2_67
134.1
M2_68
123.4
M2_69
123.2
M2_70
120.4
M2_71
119.8
M2_72
117.1
M2_73
116.7
M2_74
115.0
M2_75
114.3
M2_76
113.3
M2_77
111.5
M2_78
111.4
M2_79
111.1
M2_80
104.1
M2_81
103.0
M2_82
101.4
M2_83
101.0
M2_84
93.7
M2_85
91.4
M2_86
87.1
M2_87
85.3
M2_88
78.7
M2_89
74.1
M2_90
71.4
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