A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.4
nTPM
Monaco:
107.4
nTPM
Schmiedel:
98.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.4
HPA sample
nTPM
NK-cell nTPM: 4.4
Samples: 6
Max nTPM: 7.8
Min nTPM: 0.0
P10809_1013
7.8
P10809_1033
0.0
P10809_1052
3.0
P10809_1071
1.7
P10809_1093
7.1
P10809_1103
6.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.4
Monaco sample
nTPM
NK-cell nTPM: 107.4
Samples: 4
Max nTPM: 127.9
Min nTPM: 92.4
RHH5316_R3683
107.6
RHH5224_R3596
101.8
RHH5253_R3625
127.9
RHH5282_R3654
92.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.4
Schmiedel sample id
TPM
NK-cell TPM: 98.4
Samples: 90
Max TPM: 131.8
Min TPM: 50.2
NK_1
131.8
NK_2
131.8
NK_3
130.4
NK_4
129.2
NK_5
128.0
NK_6
122.0
NK_7
121.0
NK_8
120.9
NK_9
116.4
NK_10
116.2
NK_11
115.1
NK_12
114.5
NK_13
113.2
NK_14
112.9
NK_15
112.4
NK_16
111.9
NK_17
111.8
NK_18
111.5
NK_19
110.7
NK_20
109.7
NK_21
108.7
NK_22
108.6
NK_23
107.9
NK_24
106.7
NK_25
106.4
NK_26
104.3
NK_27
104.3
NK_28
103.4
NK_29
103.1
NK_30
102.5
NK_31
102.5
NK_32
102.4
NK_33
102.4
NK_34
102.1
NK_35
101.6
NK_36
101.4
NK_37
101.2
NK_38
100.7
NK_39
100.6
NK_40
100.3
NK_41
100.3
NK_42
100.3
NK_43
99.4
NK_44
98.9
NK_45
98.5
NK_46
97.6
NK_47
97.4
NK_48
97.0
NK_49
96.6
NK_50
96.4
NK_51
96.3
NK_52
95.6
NK_53
95.4
NK_54
95.4
NK_55
94.9
NK_56
94.9
NK_57
94.0
NK_58
93.2
NK_59
93.2
NK_60
92.7
NK_61
91.4
NK_62
91.2
NK_63
91.1
NK_64
90.8
NK_65
90.6
NK_66
90.3
NK_67
89.9
NK_68
89.5
NK_69
89.2
NK_70
88.8
NK_71
88.5
NK_72
87.5
NK_73
87.5
NK_74
87.3
NK_75
87.2
NK_76
86.9
NK_77
86.7
NK_78
84.1
NK_79
84.1
NK_80
80.5
NK_81
79.6
NK_82
78.9
NK_83
78.5
NK_84
75.4
NK_85
74.6
NK_86
73.3
NK_87
72.6
NK_88
72.2
NK_89
65.9
NK_90
50.2
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