A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.1
nTPM
Monaco:
155.4
nTPM
Schmiedel:
105.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.1
HPA sample
nTPM
Classical monocyte nTPM: 13.6
Samples: 6
Max nTPM: 34.4
Min nTPM: 5.7
P10809_1003
34.4
P10809_1020
11.3
P10809_1039
5.7
P10809_1058
10.1
P10809_1080
10.6
P10809_1107
9.4
Intermediate monocyte nTPM: 17.1
Samples: 6
Max nTPM: 28.5
Min nTPM: 10.1
P10809_1004
28.5
P10809_1023
12.8
P10809_1042
18.0
P10809_1061
22.7
P10809_1081
10.1
P10809_1108
10.7
Non-classical monocyte nTPM: 19.1
Samples: 5
Max nTPM: 34.3
Min nTPM: 9.6
P10809_1005
34.3
P10809_1053
16.5
P10809_1072
25.5
P10809_1082
9.6
P10809_1109
9.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
155.4
Monaco sample
nTPM
Classical monocyte nTPM: 117.3
Samples: 4
Max nTPM: 134.6
Min nTPM: 102.7
RHH5313_R3680
113.0
RHH5221_R3593
118.9
RHH5250_R3622
134.6
RHH5279_R3651
102.7
Intermediate monocyte nTPM: 155.4
Samples: 4
Max nTPM: 190.7
Min nTPM: 126.7
RHH5314_R3681
126.7
RHH5222_R3594
190.7
RHH5251_R3623
157.4
RHH5280_R3652
146.9
Non-classical monocyte nTPM: 149.1
Samples: 4
Max nTPM: 170.1
Min nTPM: 125.4
RHH5315_R3682
125.4
RHH5223_R3595
170.1
RHH5252_R3624
149.9
RHH5281_R3653
150.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.1
Schmiedel sample id
TPM
Classical monocyte TPM: 69.5
Samples: 91
Max TPM: 94.3
Min TPM: 51.5
MONOCYTES_1
94.3
MONOCYTES_2
91.6
MONOCYTES_3
90.2
MONOCYTES_4
88.8
MONOCYTES_5
86.7
MONOCYTES_6
86.7
MONOCYTES_7
86.4
MONOCYTES_8
85.0
MONOCYTES_9
81.9
MONOCYTES_10
80.3
MONOCYTES_11
80.0
MONOCYTES_12
78.7
MONOCYTES_13
78.4
MONOCYTES_14
78.1
MONOCYTES_15
76.9
MONOCYTES_16
76.6
MONOCYTES_17
76.5
MONOCYTES_18
76.5
MONOCYTES_19
76.3
MONOCYTES_20
76.2
MONOCYTES_21
75.9
MONOCYTES_22
75.7
MONOCYTES_23
75.6
MONOCYTES_24
75.5
MONOCYTES_25
75.2
MONOCYTES_26
75.2
MONOCYTES_27
75.0
MONOCYTES_28
73.5
MONOCYTES_29
73.3
MONOCYTES_30
73.0
MONOCYTES_31
72.9
MONOCYTES_32
72.5
MONOCYTES_33
72.4
MONOCYTES_34
71.8
MONOCYTES_35
71.5
MONOCYTES_36
71.4
MONOCYTES_37
71.2
MONOCYTES_38
70.7
MONOCYTES_39
70.5
MONOCYTES_40
70.4
MONOCYTES_41
70.1
MONOCYTES_42
69.9
MONOCYTES_43
69.7
MONOCYTES_44
69.5
MONOCYTES_45
69.4
MONOCYTES_46
69.3
MONOCYTES_47
69.3
MONOCYTES_48
69.2
MONOCYTES_49
69.0
MONOCYTES_50
68.9
MONOCYTES_51
68.7
MONOCYTES_52
68.6
MONOCYTES_53
68.4
MONOCYTES_54
68.2
MONOCYTES_55
66.2
MONOCYTES_56
65.8
MONOCYTES_57
65.8
MONOCYTES_58
65.5
MONOCYTES_59
65.2
MONOCYTES_60
65.2
MONOCYTES_61
64.5
MONOCYTES_62
64.3
MONOCYTES_63
64.3
MONOCYTES_64
64.2
MONOCYTES_65
64.2
MONOCYTES_66
63.9
MONOCYTES_67
63.5
MONOCYTES_68
63.5
MONOCYTES_69
62.8
MONOCYTES_70
62.7
MONOCYTES_71
61.6
MONOCYTES_72
61.5
MONOCYTES_73
61.5
MONOCYTES_74
61.4
MONOCYTES_75
60.8
MONOCYTES_76
60.5
MONOCYTES_77
60.2
MONOCYTES_78
58.8
MONOCYTES_79
58.7
MONOCYTES_80
58.4
MONOCYTES_81
57.5
MONOCYTES_82
57.4
MONOCYTES_83
57.4
MONOCYTES_84
56.8
MONOCYTES_85
56.6
MONOCYTES_86
56.4
MONOCYTES_87
56.2
MONOCYTES_88
55.3
MONOCYTES_89
54.5
MONOCYTES_90
51.6
MONOCYTES_91
51.5
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Non-classical monocyte TPM: 105.1
Samples: 90
Max TPM: 137.0
Min TPM: 81.2
M2_1
137.0
M2_2
135.0
M2_3
134.3
M2_4
131.8
M2_5
130.2
M2_6
127.4
M2_7
125.1
M2_8
122.3
M2_9
121.3
M2_10
119.4
M2_11
119.2
M2_12
119.1
M2_13
118.4
M2_14
118.2
M2_15
117.9
M2_16
116.9
M2_17
116.5
M2_18
115.6
M2_19
115.5
M2_20
114.7
M2_21
113.3
M2_22
113.1
M2_23
112.7
M2_24
111.6
M2_25
111.6
M2_26
111.5
M2_27
110.7
M2_28
110.7
M2_29
110.2
M2_30
110.2
M2_31
110.0
M2_32
109.6
M2_33
109.5
M2_34
109.4
M2_35
109.4
M2_36
109.0
M2_37
108.6
M2_38
108.2
M2_39
107.9
M2_40
107.0
M2_41
106.8
M2_42
106.4
M2_43
106.3
M2_44
105.8
M2_45
105.4
M2_46
104.3
M2_47
103.8
M2_48
103.7
M2_49
103.4
M2_50
102.9
M2_51
102.5
M2_52
102.4
M2_53
101.5
M2_54
101.5
M2_55
100.9
M2_56
100.2
M2_57
99.9
M2_58
99.7
M2_59
99.5
M2_60
98.9
M2_61
98.8
M2_62
98.5
M2_63
97.8
M2_64
96.9
M2_65
96.9
M2_66
96.0
M2_67
95.9
M2_68
95.8
M2_69
95.7
M2_70
95.2
M2_71
95.0
M2_72
94.8
M2_73
94.7
M2_74
92.7
M2_75
92.4
M2_76
92.1
M2_77
91.8
M2_78
91.2
M2_79
90.3
M2_80
88.4
M2_81
88.1
M2_82
87.7
M2_83
87.1
M2_84
86.3
M2_85
86.0
M2_86
84.1
M2_87
83.3
M2_88
83.3
M2_89
81.4
M2_90
81.2
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