A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
108.3
nTPM
Monaco:
375.1
nTPM
Schmiedel:
560.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
108.3
HPA sample
nTPM
Memory B-cell nTPM: 88.5
Samples: 6
Max nTPM: 192.2
Min nTPM: 56.2
P10809_1017
77.3
P10809_1025
65.6
P10809_1044
192.2
P10809_1063
77.4
P10809_1092
62.1
P10809_1105
56.2
Naive B-cell nTPM: 108.3
Samples: 6
Max nTPM: 155.5
Min nTPM: 93.6
P10809_1011
93.6
P10809_1029
101.9
P10809_1048
155.5
P10809_1067
100.1
P10809_1091
102.8
P10809_1104
95.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
375.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 214.9
Samples: 4
Max nTPM: 270.1
Min nTPM: 137.5
RHH5310_R3677
214.5
RHH5218_R3590
237.4
RHH5247_R3619
270.1
RHH5276_R3648
137.5
Naive B-cell nTPM: 375.1
Samples: 4
Max nTPM: 433.3
Min nTPM: 305.8
RHH5308_R3675
378.3
RHH5216_R3588
433.3
RHH5245_R3617
305.8
RHH5274_R3646
383.1
Non-switched memory B-cell nTPM: 234.3
Samples: 4
Max nTPM: 304.7
Min nTPM: 168.3
RHH5309_R3676
202.5
RHH5217_R3589
304.7
RHH5246_R3618
261.9
RHH5275_R3647
168.3
Plasmablast nTPM: 181.5
Samples: 4
Max nTPM: 222.0
Min nTPM: 103.1
RHH5312_R3679
218.8
RHH5220_R3592
222.0
RHH5249_R3621
181.9
RHH5278_R3650
103.1
Switched memory B-cell nTPM: 234.2
Samples: 4
Max nTPM: 276.8
Min nTPM: 158.7
RHH5311_R3678
238.2
RHH5219_R3591
276.8
RHH5248_R3620
263.0
RHH5277_R3649
158.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
560.7
Schmiedel sample id
TPM
Naive B-cell TPM: 560.7
Samples: 91
Max TPM: 861.1
Min TPM: 319.0
B_CELL_NAIVE_1
861.1
B_CELL_NAIVE_2
840.8
B_CELL_NAIVE_3
834.6
B_CELL_NAIVE_4
826.7
B_CELL_NAIVE_5
818.6
B_CELL_NAIVE_6
775.8
B_CELL_NAIVE_7
774.7
B_CELL_NAIVE_8
759.4
B_CELL_NAIVE_9
749.2
B_CELL_NAIVE_10
713.7
B_CELL_NAIVE_11
685.8
B_CELL_NAIVE_12
675.7
B_CELL_NAIVE_13
671.5
B_CELL_NAIVE_14
671.3
B_CELL_NAIVE_15
665.0
B_CELL_NAIVE_16
662.9
B_CELL_NAIVE_17
648.9
B_CELL_NAIVE_18
639.6
B_CELL_NAIVE_19
637.6
B_CELL_NAIVE_20
635.6
B_CELL_NAIVE_21
626.9
B_CELL_NAIVE_22
626.6
B_CELL_NAIVE_23
618.1
B_CELL_NAIVE_24
616.7
B_CELL_NAIVE_25
611.9
B_CELL_NAIVE_26
610.2
B_CELL_NAIVE_27
599.1
B_CELL_NAIVE_28
597.3
B_CELL_NAIVE_29
593.9
B_CELL_NAIVE_30
588.0
B_CELL_NAIVE_31
582.7
B_CELL_NAIVE_32
573.7
B_CELL_NAIVE_33
572.2
B_CELL_NAIVE_34
569.0
B_CELL_NAIVE_35
566.6
B_CELL_NAIVE_36
557.2
B_CELL_NAIVE_37
555.9
B_CELL_NAIVE_38
555.3
B_CELL_NAIVE_39
554.2
B_CELL_NAIVE_40
550.0
B_CELL_NAIVE_41
548.4
B_CELL_NAIVE_42
545.6
B_CELL_NAIVE_43
544.6
B_CELL_NAIVE_44
544.1
B_CELL_NAIVE_45
540.8
B_CELL_NAIVE_46
540.1
B_CELL_NAIVE_47
538.9
B_CELL_NAIVE_48
533.6
B_CELL_NAIVE_49
531.3
B_CELL_NAIVE_50
529.8
B_CELL_NAIVE_51
522.2
B_CELL_NAIVE_52
518.9
B_CELL_NAIVE_53
517.9
B_CELL_NAIVE_54
515.9
B_CELL_NAIVE_55
515.6
B_CELL_NAIVE_56
514.2
B_CELL_NAIVE_57
510.5
B_CELL_NAIVE_58
510.3
B_CELL_NAIVE_59
508.2
B_CELL_NAIVE_60
503.2
B_CELL_NAIVE_61
502.2
B_CELL_NAIVE_62
501.9
B_CELL_NAIVE_63
500.3
B_CELL_NAIVE_64
499.5
B_CELL_NAIVE_65
499.3
B_CELL_NAIVE_66
495.1
B_CELL_NAIVE_67
491.4
B_CELL_NAIVE_68
486.3
B_CELL_NAIVE_69
485.1
B_CELL_NAIVE_70
483.3
B_CELL_NAIVE_71
483.2
B_CELL_NAIVE_72
477.5
B_CELL_NAIVE_73
476.5
B_CELL_NAIVE_74
472.1
B_CELL_NAIVE_75
470.8
B_CELL_NAIVE_76
469.7
B_CELL_NAIVE_77
460.6
B_CELL_NAIVE_78
459.1
B_CELL_NAIVE_79
456.9
B_CELL_NAIVE_80
455.4
B_CELL_NAIVE_81
454.1
B_CELL_NAIVE_82
450.0
B_CELL_NAIVE_83
448.4
B_CELL_NAIVE_84
445.8
B_CELL_NAIVE_85
425.4
B_CELL_NAIVE_86
422.0
B_CELL_NAIVE_87
416.6
B_CELL_NAIVE_88
413.8
B_CELL_NAIVE_89
411.7
B_CELL_NAIVE_90
381.6
B_CELL_NAIVE_91
319.0
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