A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.0
nTPM
Monaco:
27.2
nTPM
Schmiedel:
25.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.0
HPA sample
nTPM
NK-cell nTPM: 39.0
Samples: 6
Max nTPM: 51.3
Min nTPM: 22.6
P10809_1013
42.1
P10809_1033
22.6
P10809_1052
40.3
P10809_1071
41.6
P10809_1093
36.0
P10809_1103
51.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.2
Monaco sample
nTPM
NK-cell nTPM: 27.2
Samples: 4
Max nTPM: 48.5
Min nTPM: 12.3
RHH5316_R3683
22.6
RHH5224_R3596
48.5
RHH5253_R3625
12.3
RHH5282_R3654
25.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.9
Schmiedel sample id
TPM
NK-cell TPM: 25.9
Samples: 90
Max TPM: 54.3
Min TPM: 5.2
NK_1
54.3
NK_2
51.6
NK_3
48.0
NK_4
44.9
NK_5
43.5
NK_6
42.2
NK_7
40.7
NK_8
40.2
NK_9
38.1
NK_10
36.8
NK_11
36.5
NK_12
35.7
NK_13
35.4
NK_14
35.2
NK_15
35.0
NK_16
34.8
NK_17
34.5
NK_18
34.3
NK_19
34.2
NK_20
33.5
NK_21
32.8
NK_22
32.5
NK_23
32.1
NK_24
31.9
NK_25
31.5
NK_26
31.3
NK_27
30.6
NK_28
30.4
NK_29
30.1
NK_30
29.7
NK_31
28.8
NK_32
28.3
NK_33
27.4
NK_34
27.1
NK_35
26.9
NK_36
26.8
NK_37
26.8
NK_38
26.7
NK_39
26.6
NK_40
26.1
NK_41
25.8
NK_42
25.2
NK_43
25.1
NK_44
25.0
NK_45
25.0
NK_46
24.8
NK_47
24.8
NK_48
24.7
NK_49
24.3
NK_50
24.1
NK_51
24.0
NK_52
23.7
NK_53
23.6
NK_54
23.2
NK_55
22.9
NK_56
22.8
NK_57
22.8
NK_58
22.7
NK_59
22.7
NK_60
22.6
NK_61
22.5
NK_62
22.4
NK_63
22.3
NK_64
22.3
NK_65
21.9
NK_66
21.4
NK_67
21.3
NK_68
20.7
NK_69
20.0
NK_70
19.0
NK_71
18.9
NK_72
18.5
NK_73
18.1
NK_74
17.9
NK_75
16.7
NK_76
16.6
NK_77
16.3
NK_78
16.2
NK_79
15.5
NK_80
15.0
NK_81
13.8
NK_82
13.6
NK_83
12.0
NK_84
10.9
NK_85
10.3
NK_86
9.6
NK_87
7.8
NK_88
6.7
NK_89
5.8
NK_90
5.2
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
