MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.8 nTPM
HPA Brain:34.4 nTPM
GTEx:16.8 nTPM
FANTOM5:52.8 Scaled Tags Per Million
Pig:39.2 nTPM
Mouse:90.7 nTPM
Allen mouse:7.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 34.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.0
2019 Male, age 18, unknown 34.9
1827 Male, age 72, unknown 32.8
1870 Female, age 42, unknown 31.2
2411 Female, age 72, unknown 30.7
2219 Male, age 76, both hemispheres 29.5
1833 Male, age 53, unknown 28.9
1830 Male, age 51, unknown 26.8
2828 Female, age 72, unknown 26.4
2666 Male, age 74, left hemisphere 25.3
2586 Male, age 75, left hemisphere 23.5
Dorsal raphe nucleus
nTPM: 32.4
2298 Female, age 72, unknown 36.5
2016 Female, age 72, unknown 33.1
1828 Male, age 53, unknown 32.5
2047 Male, age 72, unknown 30.6
2750 Male, age 76, both hemispheres 29.1
Inferior colliculus
nTPM: 32.4
2097 Female, age 72, unknown 34.9
1890 Male, age 53, unknown 32.2
1848 Female, age 42, unknown 31.9
2849 Male, age 72, unknown 30.8
Median raphe nucleus
nTPM: 28.3
2220 Male, age 76, midline 28.3
Periaquaductal grey, anterior
nTPM: 31.7
1947 Male, age 18, unknown 35.3
2502 Female, age 75, unknown 30.3
1795 Male, age 51, unknown 29.4
Periaquaductal grey, dorsal
nTPM: 30.9
2850 Male, age 76, both hemispheres 32.6
1840 Male, age 53, unknown 32.5
1831 Male, age 72, unknown 30.2
2464 Female, age 72, unknown 28.3
Periaquaductal grey, lateral
nTPM: 31.2
2272 Male, age 74, both hemispheres 33.7
2140 Male, age 76, both hemispheres 30.7
2053 Male, age 18, unknown 29.1
Pretectal area
nTPM: 34.4
1817 Female, age 42, unknown 39.6
2007 Male, age 72, unknown 37.9
1816 Male, age 51, unknown 37.3
2273 Male, age 74, both hemispheres 36.9
1944 Female, age 72, unknown 36.5
1815 Male, age 53, unknown 36.0
2667 Female, age 75, unknown 34.0
2224 Female, age 72, unknown 32.7
2407 Male, age 75, both hemispheres 31.7
2825 Male, age 18, unknown 28.3
2316 Male, age 76, right hemisphere 28.1
Red nucleus
nTPM: 30.3
1821 Female, age 72, unknown 38.6
2725 Female, age 75, unknown 35.4
2503 Female, age 72, unknown 31.8
1865 Male, age 51, unknown 30.8
2785 Male, age 18, unknown 30.8
1954 Female, age 42, unknown 30.7
2823 Male, age 76, right hemisphere 29.4
2227 Male, age 72, unknown 27.9
1904 Male, age 53, unknown 27.8
2769 Male, age 72, unknown 27.8
2588 Male, age 74, left hemisphere 26.6
2584 Male, age 75, left hemisphere 25.6
Substantia nigra
nTPM: 34.3
1916 Female, age 42, unknown 38.2
2241 Male, age 72, unknown 37.9
1889 Female, age 72, unknown 37.1
1941 Male, age 53, unknown 35.4
2409 Female, age 72, unknown 34.0
1851 Male, age 51, unknown 33.9
2590 Female, age 75, unknown 32.0
2583 Male, age 75, right hemisphere 31.8
2665 Male, age 74, both hemispheres 31.6
2699 Male, age 18, unknown 31.6
Superior colliculus
nTPM: 30.0
1895 Male, age 76, right hemisphere 33.0
2087 Female, age 72, unknown 32.8
2587 Male, age 74, left hemisphere 32.0
1839 Male, age 51, unknown 30.9
2261 Male, age 18, unknown 30.2
1796 Male, age 53, unknown 29.4
1913 Female, age 42, unknown 29.4
2668 Female, age 75, unknown 28.6
1995 Male, age 72, unknown 28.3
2664 Male, age 75, both hemispheres 25.1
Ventral tegmental area
nTPM: 30.7
2410 Female, age 72, unknown 34.2
2218 Male, age 76, both hemispheres 31.7
1942 Male, age 51, unknown 30.9
1915 Female, age 42, unknown 30.7
2021 Male, age 53, unknown 29.3
2223 Female, age 72, unknown 27.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.8
Samples: 183

Max nTPM: 29.6
Min nTPM: 9.3
Std nTPM: 3.6
Median nTPM: 16.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 29.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 24.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 24.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 24.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 24.3
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 24.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 23.7
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 23.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 23.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.8
FF:10158-103A5 76 years, female 52.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.6
Samples: 4

Max nTPM: 39.7
Min nTPM: 29.9
Sample A Female 39.7
Sample B Female 32.1
Sample C Male 36.6
Sample D Male 29.9
Midbrain
nTPM: 38.7
Samples: 4

Max nTPM: 46.2
Min nTPM: 33.9
Sample A Female 34.2
Sample B Female 33.9
Sample C Male 46.2
Sample D Male 40.5
Periaqueductal gray
nTPM: 31.7
Samples: 3

Max nTPM: 35.3
Min nTPM: 29.8
Sample B Female 29.8
Sample C Male 35.3
Sample D Male 30.0
Superior colliculi
nTPM: 39.2
Samples: 4

Max nTPM: 43.7
Min nTPM: 34.3
Sample A Female 41.1
Sample B Female 34.3
Sample C Male 43.7
Sample D Male 37.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 90.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.7
Samples: 4

Max nTPM: 97.3
Min nTPM: 85.1
Sample A Male 85.1
Sample B Male 93.5
Sample C Female 97.3
Sample D Female 86.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
75774648 Antisense, RP_060601_01_A05, Mouse strain C57BL/6J (56 days, male) 7.6

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