On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
10.8
nTPM
HPA Brain:
96.6
nTPM
GTEx:
10.8
nTPM
FANTOM5:
115.4
Scaled Tags Per Million
Macaque:
70.9
nTPM
Mouse:
10.2
nTPM
Rat:
16.1
nTPM
Pig:
233.5
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
139004
Sample
Intensity
Spinal cord_01
236417
Spinal cord_02
483999
Spinal cord_03
229015
Spinal cord_04
139547
Spinal cord_05
101891
Spinal cord_06
116574
Spinal cord_07
138461
Spinal cord_08
85504
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
96.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 72.4
2818
Female, age 79, both hemispheres
81.9
2193
Male, age 75, both hemispheres
75.9
2734
Male, age 80, both hemispheres
67.4
2819
Male, age 47, both hemispheres
64.4
Cervical spinal cord, central gray nTPM: 68.0
2048
Male, age 55, midline
89.6
1981
Female, age 72, midline
82.9
2816
Male, age 47, midline
65.2
2194
Female, age 79, both hemispheres
58.1
2565
Male, age 75, midline
44.3
Cervical spinal cord, dorsal horn nTPM: 63.5
2296
Male, age 66, both hemispheres
105.8
2173
Female, age 72, unknown
91.1
2069
Male, age 47, both hemispheres
59.5
2721
Male, age 90, both hemispheres
56.8
1877
Male, age 55, unknown
48.8
2297
Male, age 75, both hemispheres
18.7
Cervical spinal cord, ventral horn nTPM: 54.5
2098
Female, age 72, unknown
89.1
2295
Male, age 66, both hemispheres
54.8
2068
Male, age 55, unknown
52.0
2820
Female, age 79, both hemispheres
44.2
2809
Male, age 90, both hemispheres
44.0
2480
Male, age 75, both hemispheres
43.2
Dorsal funiculus (white matter) nTPM: 81.8
2064
Female, age 79, both hemispheres
119.1
2817
Male, age 47, both hemispheres
84.4
2128
Male, age 75, both hemispheres
81.2
2810
Male, age 90, both hemispheres
66.2
2812
Male, age 66, both hemispheres
58.3
Lateral funiculus (white matter) nTPM: 96.6
2099
Male, age 90, both hemispheres
131.8
2094
Female, age 79, both hemispheres
103.7
2192
Male, age 75, both hemispheres
86.4
2294
Male, age 66, both hemispheres
64.6
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.8
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 10.8
Samples: 204
Max nTPM: 30.8
Min nTPM: 0.8
Std nTPM: 5.2
Median nTPM: 10.4
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
30.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
28.4
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
25.9
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
24.1
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
24.1
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
24.1
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
22.6
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
21.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
20.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
20.6
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
20.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
19.7
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
19.2
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
19.1
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
18.5
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
18.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
18.3
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
18.2
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
18.2
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
18.0
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
17.9
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
17.8
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
17.8
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
17.0
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
16.9
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
16.9
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
16.8
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
16.6
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
16.3
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
16.2
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
16.2
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
16.0
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
16.0
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
15.9
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
15.8
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
15.7
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
15.7
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
15.6
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
15.4
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
15.1
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
15.0
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
14.8
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
14.5
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
14.2
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
14.2
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
14.1
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
13.9
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
13.8
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
13.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
13.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
13.7
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
13.6
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
13.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
13.5
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
13.5
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
13.4
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
13.3
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
13.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
13.0
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
13.0
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
12.9
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
12.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
12.7
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
12.6
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
12.3
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
12.3
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
12.3
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
12.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
12.1
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
12.0
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
12.0
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
11.9
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
11.9
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
11.9
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
11.8
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
11.7
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
11.7
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
11.7
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
11.6
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
11.6
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
11.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
11.5
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
11.4
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
11.3
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
11.3
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
11.2
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
11.2
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
11.0
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
10.9
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
10.8
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
10.8
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
10.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
10.8
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
10.7
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
10.7
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
10.6
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
10.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
10.5
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
10.5
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
10.4
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
10.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
10.4
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
10.3
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
10.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
10.1
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
10.0
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
10.0
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
9.9
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
9.8
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
9.8
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
9.7
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
9.5
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
9.5
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
9.3
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
9.2
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
9.1
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
9.0
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
9.0
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
9.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
9.0
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
9.0
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
8.9
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
8.9
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
8.7
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
8.7
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
8.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
8.6
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
8.6
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
8.6
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
8.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
8.6
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
8.5
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
8.4
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
8.4
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
8.4
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
8.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
8.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
8.3
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
8.1
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
8.1
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
8.0
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
8.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
8.0
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
8.0
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
8.0
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
7.9
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
7.9
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
7.9
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
7.7
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
7.5
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
7.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
7.5
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
7.4
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
7.3
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
7.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
7.1
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
7.0
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
6.9
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
6.9
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
6.9
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
6.7
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
6.5
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
6.5
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
6.4
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
6.2
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
6.1
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
6.0
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
5.9
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
5.8
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
5.7
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
5.7
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
5.7
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
5.7
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
5.6
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
5.6
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
5.5
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
5.5
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
5.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
5.1
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
5.1
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
5.0
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
4.9
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
4.9
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
4.7
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
4.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
4.5
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
4.4
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
4.3
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
4.3
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
4.3
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
4.3
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
4.1
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
4.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
3.6
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
3.3
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
2.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
2.7
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
2.4
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
2.4
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
2.4
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
2.3
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
2.3
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
1.8
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
0.8
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.9
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 70.9
Samples: 2
Max nTPM: 81.6
Min nTPM: 60.2
Sample A
81.6
Sample B
60.2
Ventral spinal cord nTPM: 57.6
Samples: 1
Max nTPM: 57.6
Min nTPM: 57.6
Sample A
57.6
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
233.5
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 177.6
Samples: 4
Max nTPM: 213.2
Min nTPM: 161.8
Sample A
Female
165.3
Sample B
Female
170.0
Sample C
Male
213.2
Sample D
Male
161.8
Ventral spinal cord nTPM: 233.6
Samples: 4
Max nTPM: 273.0
Min nTPM: 180.2
Sample A
Female
249.3
Sample B
Female
180.2
Sample C
Male
231.7
Sample D
Male
273.0
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
10.2
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 10.2
Samples: 4
Max nTPM: 11.1
Min nTPM: 9.1
Sample A
11.1
Sample B
9.1
Sample C
10.3
Sample D
10.1
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.1
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 16.2
Samples: 4
Max nTPM: 18.0
Min nTPM: 13.6
Sample A
18.0
Sample A
17.2
Sample A
15.8
Sample A
13.6
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The Human Protein Atlas project is funded
