A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.9
nTPM
Monaco:
230.5
nTPM
Schmiedel:
55.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.9
HPA sample
nTPM
Memory B-cell nTPM: 15.9
Samples: 6
Max nTPM: 20.5
Min nTPM: 12.2
P10809_1017
12.2
P10809_1025
13.9
P10809_1044
14.9
P10809_1063
20.5
P10809_1092
20.4
P10809_1105
13.7
Naive B-cell nTPM: 9.5
Samples: 6
Max nTPM: 15.2
Min nTPM: 0.0
P10809_1011
8.5
P10809_1029
10.5
P10809_1048
0.0
P10809_1067
15.2
P10809_1091
10.6
P10809_1104
12.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
230.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 117.8
Samples: 4
Max nTPM: 192.0
Min nTPM: 71.0
RHH5310_R3677
98.8
RHH5218_R3590
192.0
RHH5247_R3619
71.0
RHH5276_R3648
109.4
Naive B-cell nTPM: 118.4
Samples: 4
Max nTPM: 144.8
Min nTPM: 94.6
RHH5308_R3675
121.2
RHH5216_R3588
94.6
RHH5245_R3617
112.9
RHH5274_R3646
144.8
Non-switched memory B-cell nTPM: 172.6
Samples: 4
Max nTPM: 198.4
Min nTPM: 144.7
RHH5309_R3676
152.9
RHH5217_R3589
194.2
RHH5246_R3618
144.7
RHH5275_R3647
198.4
Plasmablast nTPM: 11.3
Samples: 4
Max nTPM: 20.3
Min nTPM: 3.6
RHH5312_R3679
12.4
RHH5220_R3592
9.0
RHH5249_R3621
3.6
RHH5278_R3650
20.3
Switched memory B-cell nTPM: 230.5
Samples: 4
Max nTPM: 275.1
Min nTPM: 201.8
RHH5311_R3678
201.8
RHH5219_R3591
223.6
RHH5248_R3620
275.1
RHH5277_R3649
221.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.7
Schmiedel sample id
TPM
Naive B-cell TPM: 55.7
Samples: 91
Max TPM: 96.0
Min TPM: 13.6
B_CELL_NAIVE_1
96.0
B_CELL_NAIVE_2
94.0
B_CELL_NAIVE_3
89.6
B_CELL_NAIVE_4
88.0
B_CELL_NAIVE_5
85.7
B_CELL_NAIVE_6
84.5
B_CELL_NAIVE_7
84.2
B_CELL_NAIVE_8
83.2
B_CELL_NAIVE_9
82.7
B_CELL_NAIVE_10
82.2
B_CELL_NAIVE_11
80.6
B_CELL_NAIVE_12
80.4
B_CELL_NAIVE_13
79.0
B_CELL_NAIVE_14
75.9
B_CELL_NAIVE_15
75.8
B_CELL_NAIVE_16
74.3
B_CELL_NAIVE_17
74.2
B_CELL_NAIVE_18
73.4
B_CELL_NAIVE_19
73.2
B_CELL_NAIVE_20
72.5
B_CELL_NAIVE_21
72.1
B_CELL_NAIVE_22
69.1
B_CELL_NAIVE_23
68.6
B_CELL_NAIVE_24
68.5
B_CELL_NAIVE_25
67.6
B_CELL_NAIVE_26
66.9
B_CELL_NAIVE_27
66.4
B_CELL_NAIVE_28
66.2
B_CELL_NAIVE_29
65.4
B_CELL_NAIVE_30
64.4
B_CELL_NAIVE_31
64.2
B_CELL_NAIVE_32
64.1
B_CELL_NAIVE_33
63.9
B_CELL_NAIVE_34
63.6
B_CELL_NAIVE_35
62.9
B_CELL_NAIVE_36
62.8
B_CELL_NAIVE_37
62.5
B_CELL_NAIVE_38
62.2
B_CELL_NAIVE_39
62.1
B_CELL_NAIVE_40
61.8
B_CELL_NAIVE_41
61.7
B_CELL_NAIVE_42
61.0
B_CELL_NAIVE_43
60.7
B_CELL_NAIVE_44
60.1
B_CELL_NAIVE_45
58.1
B_CELL_NAIVE_46
57.8
B_CELL_NAIVE_47
56.7
B_CELL_NAIVE_48
54.7
B_CELL_NAIVE_49
54.6
B_CELL_NAIVE_50
54.1
B_CELL_NAIVE_51
54.0
B_CELL_NAIVE_52
53.4
B_CELL_NAIVE_53
52.9
B_CELL_NAIVE_54
52.5
B_CELL_NAIVE_55
51.9
B_CELL_NAIVE_56
51.9
B_CELL_NAIVE_57
51.0
B_CELL_NAIVE_58
49.4
B_CELL_NAIVE_59
48.6
B_CELL_NAIVE_60
48.4
B_CELL_NAIVE_61
47.0
B_CELL_NAIVE_62
46.7
B_CELL_NAIVE_63
46.6
B_CELL_NAIVE_64
46.4
B_CELL_NAIVE_65
46.4
B_CELL_NAIVE_66
44.8
B_CELL_NAIVE_67
44.7
B_CELL_NAIVE_68
44.4
B_CELL_NAIVE_69
43.2
B_CELL_NAIVE_70
42.7
B_CELL_NAIVE_71
41.5
B_CELL_NAIVE_72
37.6
B_CELL_NAIVE_73
36.2
B_CELL_NAIVE_74
35.7
B_CELL_NAIVE_75
34.9
B_CELL_NAIVE_76
34.8
B_CELL_NAIVE_77
34.5
B_CELL_NAIVE_78
33.3
B_CELL_NAIVE_79
31.9
B_CELL_NAIVE_80
30.7
B_CELL_NAIVE_81
30.6
B_CELL_NAIVE_82
29.5
B_CELL_NAIVE_83
29.4
B_CELL_NAIVE_84
22.8
B_CELL_NAIVE_85
22.0
B_CELL_NAIVE_86
18.8
B_CELL_NAIVE_87
18.2
B_CELL_NAIVE_88
17.8
B_CELL_NAIVE_89
16.4
B_CELL_NAIVE_90
14.0
B_CELL_NAIVE_91
13.6
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