A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.6
nTPM
Monaco:
154.5
nTPM
Schmiedel:
49.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.6
HPA sample
nTPM
Classical monocyte nTPM: 11.2
Samples: 6
Max nTPM: 19.4
Min nTPM: 5.9
P10809_1003
19.4
P10809_1020
8.8
P10809_1039
5.9
P10809_1058
11.7
P10809_1080
12.9
P10809_1107
8.5
Intermediate monocyte nTPM: 15.6
Samples: 6
Max nTPM: 28.2
Min nTPM: 7.6
P10809_1004
20.5
P10809_1023
7.6
P10809_1042
16.6
P10809_1061
28.2
P10809_1081
11.2
P10809_1108
9.4
Non-classical monocyte nTPM: 15.2
Samples: 5
Max nTPM: 26.7
Min nTPM: 8.3
P10809_1005
13.9
P10809_1053
14.6
P10809_1072
26.7
P10809_1082
8.3
P10809_1109
12.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
154.5
Monaco sample
nTPM
Classical monocyte nTPM: 116.3
Samples: 4
Max nTPM: 136.8
Min nTPM: 93.1
RHH5313_R3680
93.1
RHH5221_R3593
113.4
RHH5250_R3622
136.8
RHH5279_R3651
121.8
Intermediate monocyte nTPM: 146.4
Samples: 4
Max nTPM: 186.1
Min nTPM: 96.3
RHH5314_R3681
96.3
RHH5222_R3594
144.3
RHH5251_R3623
186.1
RHH5280_R3652
158.8
Non-classical monocyte nTPM: 154.5
Samples: 4
Max nTPM: 188.6
Min nTPM: 98.2
RHH5315_R3682
98.2
RHH5223_R3595
158.7
RHH5252_R3624
188.6
RHH5281_R3653
172.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.9
Schmiedel sample id
TPM
Classical monocyte TPM: 49.6
Samples: 91
Max TPM: 94.5
Min TPM: 23.5
MONOCYTES_1
94.5
MONOCYTES_2
82.4
MONOCYTES_3
79.7
MONOCYTES_4
77.0
MONOCYTES_5
76.2
MONOCYTES_6
73.6
MONOCYTES_7
68.9
MONOCYTES_8
66.9
MONOCYTES_9
66.2
MONOCYTES_10
65.3
MONOCYTES_11
65.1
MONOCYTES_12
65.0
MONOCYTES_13
64.9
MONOCYTES_14
64.4
MONOCYTES_15
64.2
MONOCYTES_16
64.1
MONOCYTES_17
64.1
MONOCYTES_18
64.0
MONOCYTES_19
63.2
MONOCYTES_20
63.1
MONOCYTES_21
62.0
MONOCYTES_22
61.5
MONOCYTES_23
59.8
MONOCYTES_24
59.6
MONOCYTES_25
59.2
MONOCYTES_26
58.9
MONOCYTES_27
58.2
MONOCYTES_28
57.0
MONOCYTES_29
56.6
MONOCYTES_30
56.3
MONOCYTES_31
55.8
MONOCYTES_32
55.1
MONOCYTES_33
54.9
MONOCYTES_34
54.6
MONOCYTES_35
52.8
MONOCYTES_36
52.4
MONOCYTES_37
51.7
MONOCYTES_38
51.4
MONOCYTES_39
50.5
MONOCYTES_40
50.3
MONOCYTES_41
49.2
MONOCYTES_42
49.2
MONOCYTES_43
48.9
MONOCYTES_44
48.6
MONOCYTES_45
47.8
MONOCYTES_46
47.7
MONOCYTES_47
47.2
MONOCYTES_48
46.5
MONOCYTES_49
46.1
MONOCYTES_50
46.0
MONOCYTES_51
45.9
MONOCYTES_52
45.8
MONOCYTES_53
45.7
MONOCYTES_54
45.3
MONOCYTES_55
44.1
MONOCYTES_56
43.0
MONOCYTES_57
43.0
MONOCYTES_58
42.7
MONOCYTES_59
42.6
MONOCYTES_60
42.4
MONOCYTES_61
42.4
MONOCYTES_62
42.1
MONOCYTES_63
40.7
MONOCYTES_64
40.5
MONOCYTES_65
40.0
MONOCYTES_66
39.7
MONOCYTES_67
39.6
MONOCYTES_68
39.2
MONOCYTES_69
39.1
MONOCYTES_70
39.1
MONOCYTES_71
38.5
MONOCYTES_72
37.9
MONOCYTES_73
37.9
MONOCYTES_74
36.8
MONOCYTES_75
36.7
MONOCYTES_76
36.3
MONOCYTES_77
36.0
MONOCYTES_78
34.6
MONOCYTES_79
33.7
MONOCYTES_80
33.6
MONOCYTES_81
33.3
MONOCYTES_82
32.7
MONOCYTES_83
32.3
MONOCYTES_84
30.5
MONOCYTES_85
30.1
MONOCYTES_86
30.1
MONOCYTES_87
28.1
MONOCYTES_88
27.1
MONOCYTES_89
26.9
MONOCYTES_90
25.4
MONOCYTES_91
23.5
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Non-classical monocyte TPM: 49.9
Samples: 90
Max TPM: 89.5
Min TPM: 17.6
M2_1
89.5
M2_2
83.0
M2_3
81.7
M2_4
77.1
M2_5
75.7
M2_6
74.7
M2_7
74.0
M2_8
72.4
M2_9
72.2
M2_10
71.5
M2_11
70.8
M2_12
70.6
M2_13
68.0
M2_14
67.5
M2_15
67.3
M2_16
66.7
M2_17
65.4
M2_18
65.0
M2_19
63.7
M2_20
63.1
M2_21
62.3
M2_22
60.7
M2_23
60.5
M2_24
60.2
M2_25
58.9
M2_26
58.6
M2_27
58.5
M2_28
58.3
M2_29
58.0
M2_30
57.9
M2_31
56.9
M2_32
56.2
M2_33
55.9
M2_34
55.4
M2_35
54.7
M2_36
54.6
M2_37
54.5
M2_38
54.3
M2_39
54.3
M2_40
54.0
M2_41
53.9
M2_42
53.8
M2_43
53.0
M2_44
52.3
M2_45
51.1
M2_46
50.8
M2_47
50.0
M2_48
48.9
M2_49
48.5
M2_50
48.1
M2_51
48.1
M2_52
48.1
M2_53
48.0
M2_54
47.5
M2_55
47.5
M2_56
44.6
M2_57
44.2
M2_58
43.7
M2_59
43.4
M2_60
43.1
M2_61
43.1
M2_62
42.9
M2_63
42.3
M2_64
41.6
M2_65
41.4
M2_66
39.6
M2_67
38.7
M2_68
38.5
M2_69
35.1
M2_70
34.9
M2_71
34.3
M2_72
34.2
M2_73
32.7
M2_74
32.3
M2_75
30.5
M2_76
30.1
M2_77
29.1
M2_78
28.8
M2_79
28.5
M2_80
27.7
M2_81
26.8
M2_82
26.2
M2_83
25.9
M2_84
24.2
M2_85
24.1
M2_86
23.6
M2_87
23.0
M2_88
20.2
M2_89
18.6
M2_90
17.6
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