A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
210.0
nTPM
Monaco:
159.5
nTPM
Schmiedel:
56.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
210.0
HPA sample
nTPM
NK-cell nTPM: 210.0
Samples: 6
Max nTPM: 253.8
Min nTPM: 170.9
P10809_1013
180.9
P10809_1033
218.6
P10809_1052
170.9
P10809_1071
253.8
P10809_1093
215.5
P10809_1103
220.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
159.5
Monaco sample
nTPM
NK-cell nTPM: 159.5
Samples: 4
Max nTPM: 233.8
Min nTPM: 70.3
RHH5316_R3683
180.3
RHH5224_R3596
233.8
RHH5253_R3625
70.3
RHH5282_R3654
153.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.8
Schmiedel sample id
TPM
NK-cell TPM: 56.8
Samples: 90
Max TPM: 85.2
Min TPM: 34.9
NK_1
85.2
NK_2
84.2
NK_3
79.1
NK_4
78.9
NK_5
78.4
NK_6
77.0
NK_7
76.1
NK_8
73.8
NK_9
72.3
NK_10
71.7
NK_11
70.6
NK_12
69.5
NK_13
68.7
NK_14
67.6
NK_15
67.3
NK_16
66.0
NK_17
66.0
NK_18
65.8
NK_19
65.1
NK_20
65.1
NK_21
65.0
NK_22
65.0
NK_23
64.3
NK_24
64.1
NK_25
64.0
NK_26
63.8
NK_27
63.7
NK_28
62.6
NK_29
62.6
NK_30
62.6
NK_31
62.4
NK_32
61.7
NK_33
61.3
NK_34
60.9
NK_35
60.5
NK_36
60.5
NK_37
60.4
NK_38
59.8
NK_39
58.8
NK_40
58.7
NK_41
58.7
NK_42
58.6
NK_43
57.2
NK_44
57.1
NK_45
56.8
NK_46
56.6
NK_47
56.1
NK_48
54.9
NK_49
54.2
NK_50
54.1
NK_51
53.8
NK_52
53.7
NK_53
52.1
NK_54
52.0
NK_55
51.7
NK_56
51.2
NK_57
51.1
NK_58
51.0
NK_59
50.4
NK_60
50.1
NK_61
50.0
NK_62
49.9
NK_63
49.6
NK_64
49.2
NK_65
49.1
NK_66
48.9
NK_67
48.7
NK_68
48.7
NK_69
48.0
NK_70
48.0
NK_71
47.5
NK_72
47.1
NK_73
47.0
NK_74
46.7
NK_75
46.0
NK_76
45.4
NK_77
45.0
NK_78
44.7
NK_79
44.2
NK_80
43.6
NK_81
43.2
NK_82
42.5
NK_83
41.1
NK_84
40.8
NK_85
39.4
NK_86
39.4
NK_87
38.0
NK_88
37.5
NK_89
36.8
NK_90
34.9
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