A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
404.2
nTPM
Monaco:
462.4
nTPM
Schmiedel:
81.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
404.2
HPA sample
nTPM
Classical monocyte nTPM: 252.3
Samples: 6
Max nTPM: 311.4
Min nTPM: 205.4
P10809_1003
311.4
P10809_1020
266.5
P10809_1039
266.2
P10809_1058
223.2
P10809_1080
241.0
P10809_1107
205.4
Intermediate monocyte nTPM: 404.2
Samples: 6
Max nTPM: 459.4
Min nTPM: 365.6
P10809_1004
419.1
P10809_1023
429.9
P10809_1042
459.4
P10809_1061
366.0
P10809_1081
365.6
P10809_1108
385.3
Non-classical monocyte nTPM: 396.5
Samples: 5
Max nTPM: 427.8
Min nTPM: 323.0
P10809_1005
404.8
P10809_1053
401.1
P10809_1072
425.9
P10809_1082
323.0
P10809_1109
427.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
462.4
Monaco sample
nTPM
Classical monocyte nTPM: 370.5
Samples: 4
Max nTPM: 443.6
Min nTPM: 296.4
RHH5313_R3680
296.4
RHH5221_R3593
443.6
RHH5250_R3622
385.7
RHH5279_R3651
356.3
Intermediate monocyte nTPM: 462.4
Samples: 4
Max nTPM: 524.4
Min nTPM: 319.6
RHH5314_R3681
491.4
RHH5222_R3594
524.4
RHH5251_R3623
319.6
RHH5280_R3652
514.3
Non-classical monocyte nTPM: 356.3
Samples: 4
Max nTPM: 420.6
Min nTPM: 281.8
RHH5315_R3682
344.6
RHH5223_R3595
378.2
RHH5252_R3624
281.8
RHH5281_R3653
420.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.7
Schmiedel sample id
TPM
Classical monocyte TPM: 50.8
Samples: 91
Max TPM: 77.8
Min TPM: 36.3
MONOCYTES_1
77.8
MONOCYTES_2
74.3
MONOCYTES_3
72.0
MONOCYTES_4
70.6
MONOCYTES_5
69.1
MONOCYTES_6
67.0
MONOCYTES_7
63.4
MONOCYTES_8
62.5
MONOCYTES_9
61.8
MONOCYTES_10
61.1
MONOCYTES_11
59.6
MONOCYTES_12
59.4
MONOCYTES_13
58.2
MONOCYTES_14
57.9
MONOCYTES_15
57.9
MONOCYTES_16
57.7
MONOCYTES_17
57.5
MONOCYTES_18
57.5
MONOCYTES_19
57.2
MONOCYTES_20
57.0
MONOCYTES_21
56.4
MONOCYTES_22
56.2
MONOCYTES_23
56.1
MONOCYTES_24
54.4
MONOCYTES_25
54.4
MONOCYTES_26
54.3
MONOCYTES_27
53.5
MONOCYTES_28
53.2
MONOCYTES_29
53.1
MONOCYTES_30
52.4
MONOCYTES_31
52.4
MONOCYTES_32
52.2
MONOCYTES_33
52.2
MONOCYTES_34
51.8
MONOCYTES_35
51.6
MONOCYTES_36
51.3
MONOCYTES_37
50.9
MONOCYTES_38
50.9
MONOCYTES_39
50.5
MONOCYTES_40
50.5
MONOCYTES_41
50.2
MONOCYTES_42
50.0
MONOCYTES_43
49.9
MONOCYTES_44
49.8
MONOCYTES_45
49.8
MONOCYTES_46
49.1
MONOCYTES_47
49.1
MONOCYTES_48
49.0
MONOCYTES_49
48.9
MONOCYTES_50
48.8
MONOCYTES_51
48.6
MONOCYTES_52
48.4
MONOCYTES_53
48.3
MONOCYTES_54
48.0
MONOCYTES_55
47.9
MONOCYTES_56
47.7
MONOCYTES_57
47.7
MONOCYTES_58
47.6
MONOCYTES_59
47.0
MONOCYTES_60
46.9
MONOCYTES_61
46.9
MONOCYTES_62
46.7
MONOCYTES_63
46.7
MONOCYTES_64
46.6
MONOCYTES_65
46.3
MONOCYTES_66
45.9
MONOCYTES_67
45.8
MONOCYTES_68
45.6
MONOCYTES_69
45.4
MONOCYTES_70
45.2
MONOCYTES_71
44.7
MONOCYTES_72
44.7
MONOCYTES_73
44.3
MONOCYTES_74
43.7
MONOCYTES_75
43.7
MONOCYTES_76
43.5
MONOCYTES_77
43.2
MONOCYTES_78
42.2
MONOCYTES_79
42.0
MONOCYTES_80
41.9
MONOCYTES_81
41.9
MONOCYTES_82
41.6
MONOCYTES_83
41.5
MONOCYTES_84
41.1
MONOCYTES_85
40.6
MONOCYTES_86
40.4
MONOCYTES_87
40.1
MONOCYTES_88
39.5
MONOCYTES_89
39.4
MONOCYTES_90
39.0
MONOCYTES_91
36.3
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Non-classical monocyte TPM: 81.7
Samples: 90
Max TPM: 129.8
Min TPM: 59.3
M2_1
129.8
M2_2
120.4
M2_3
117.6
M2_4
115.9
M2_5
115.8
M2_6
110.5
M2_7
107.2
M2_8
106.6
M2_9
106.0
M2_10
105.9
M2_11
101.2
M2_12
101.0
M2_13
100.8
M2_14
98.0
M2_15
97.9
M2_16
96.7
M2_17
95.3
M2_18
95.1
M2_19
94.7
M2_20
92.9
M2_21
92.5
M2_22
89.4
M2_23
89.3
M2_24
89.0
M2_25
88.6
M2_26
87.9
M2_27
86.9
M2_28
86.2
M2_29
86.1
M2_30
85.3
M2_31
85.2
M2_32
85.2
M2_33
82.5
M2_34
82.3
M2_35
82.3
M2_36
81.8
M2_37
81.6
M2_38
81.4
M2_39
81.0
M2_40
80.9
M2_41
80.3
M2_42
80.0
M2_43
79.6
M2_44
79.4
M2_45
79.3
M2_46
78.9
M2_47
78.5
M2_48
77.8
M2_49
75.9
M2_50
75.4
M2_51
75.2
M2_52
75.1
M2_53
74.9
M2_54
73.8
M2_55
73.6
M2_56
73.5
M2_57
73.4
M2_58
73.3
M2_59
73.3
M2_60
73.2
M2_61
73.2
M2_62
73.1
M2_63
73.1
M2_64
72.9
M2_65
71.7
M2_66
71.6
M2_67
71.6
M2_68
70.3
M2_69
68.3
M2_70
68.1
M2_71
68.1
M2_72
67.1
M2_73
67.1
M2_74
66.8
M2_75
66.7
M2_76
66.7
M2_77
66.6
M2_78
66.1
M2_79
66.1
M2_80
66.0
M2_81
65.8
M2_82
65.1
M2_83
64.4
M2_84
64.0
M2_85
63.9
M2_86
62.5
M2_87
61.7
M2_88
61.0
M2_89
61.0
M2_90
59.3
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