A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.2
nTPM
Monaco:
31.1
nTPM
Schmiedel:
59.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.2
HPA sample
nTPM
NK-cell nTPM: 5.2
Samples: 6
Max nTPM: 16.9
Min nTPM: 0.0
P10809_1013
2.6
P10809_1033
16.9
P10809_1052
0.7
P10809_1071
0.0
P10809_1093
10.5
P10809_1103
0.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.1
Monaco sample
nTPM
NK-cell nTPM: 31.1
Samples: 4
Max nTPM: 40.5
Min nTPM: 21.4
RHH5316_R3683
25.9
RHH5224_R3596
21.4
RHH5253_R3625
36.5
RHH5282_R3654
40.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.6
Schmiedel sample id
TPM
NK-cell TPM: 59.6
Samples: 90
Max TPM: 80.0
Min TPM: 41.1
NK_1
80.0
NK_2
78.8
NK_3
78.5
NK_4
76.7
NK_5
75.5
NK_6
74.6
NK_7
72.9
NK_8
71.1
NK_9
71.0
NK_10
68.9
NK_11
68.5
NK_12
68.1
NK_13
68.1
NK_14
68.0
NK_15
67.4
NK_16
67.4
NK_17
67.4
NK_18
67.3
NK_19
67.3
NK_20
67.3
NK_21
66.8
NK_22
66.7
NK_23
66.6
NK_24
66.0
NK_25
65.6
NK_26
65.5
NK_27
64.8
NK_28
64.8
NK_29
64.3
NK_30
63.8
NK_31
63.3
NK_32
63.2
NK_33
63.2
NK_34
62.9
NK_35
62.8
NK_36
62.6
NK_37
62.6
NK_38
62.4
NK_39
61.7
NK_40
61.5
NK_41
60.0
NK_42
60.0
NK_43
60.0
NK_44
59.9
NK_45
59.6
NK_46
59.1
NK_47
59.1
NK_48
59.0
NK_49
58.8
NK_50
58.7
NK_51
58.5
NK_52
58.3
NK_53
57.9
NK_54
57.5
NK_55
57.5
NK_56
57.5
NK_57
57.2
NK_58
57.1
NK_59
56.7
NK_60
56.2
NK_61
56.1
NK_62
56.1
NK_63
55.2
NK_64
54.8
NK_65
54.7
NK_66
53.6
NK_67
53.3
NK_68
52.6
NK_69
52.5
NK_70
52.3
NK_71
52.3
NK_72
51.0
NK_73
50.9
NK_74
49.9
NK_75
49.3
NK_76
49.3
NK_77
48.7
NK_78
48.5
NK_79
48.3
NK_80
48.1
NK_81
47.6
NK_82
47.1
NK_83
46.4
NK_84
45.4
NK_85
45.0
NK_86
44.4
NK_87
44.1
NK_88
44.1
NK_89
42.3
NK_90
41.1
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