A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.8
nTPM
Monaco:
24.1
nTPM
Schmiedel:
27.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.8
HPA sample
nTPM
Classical monocyte nTPM: 3.8
Samples: 6
Max nTPM: 6.7
Min nTPM: 1.9
P10809_1003
6.7
P10809_1020
5.1
P10809_1039
2.9
P10809_1058
3.3
P10809_1080
1.9
P10809_1107
2.9
Intermediate monocyte nTPM: 4.0
Samples: 6
Max nTPM: 7.6
Min nTPM: 0.1
P10809_1004
7.1
P10809_1023
7.6
P10809_1042
4.7
P10809_1061
0.1
P10809_1081
1.9
P10809_1108
2.4
Non-classical monocyte nTPM: 8.8
Samples: 5
Max nTPM: 33.1
Min nTPM: 0.7
P10809_1005
4.4
P10809_1053
4.7
P10809_1072
33.1
P10809_1082
1.1
P10809_1109
0.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.1
Monaco sample
nTPM
Classical monocyte nTPM: 23.8
Samples: 4
Max nTPM: 33.7
Min nTPM: 14.2
RHH5313_R3680
23.7
RHH5221_R3593
14.2
RHH5250_R3622
33.7
RHH5279_R3651
23.4
Intermediate monocyte nTPM: 16.2
Samples: 4
Max nTPM: 20.4
Min nTPM: 12.5
RHH5314_R3681
14.8
RHH5222_R3594
17.2
RHH5251_R3623
12.5
RHH5280_R3652
20.4
Non-classical monocyte nTPM: 24.0
Samples: 4
Max nTPM: 34.5
Min nTPM: 18.4
RHH5315_R3682
19.2
RHH5223_R3595
34.5
RHH5252_R3624
18.4
RHH5281_R3653
24.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.6
Schmiedel sample id
TPM
Classical monocyte TPM: 27.6
Samples: 91
Max TPM: 38.6
Min TPM: 15.7
MONOCYTES_1
38.6
MONOCYTES_2
37.1
MONOCYTES_3
36.5
MONOCYTES_4
35.6
MONOCYTES_5
35.5
MONOCYTES_6
34.7
MONOCYTES_7
34.6
MONOCYTES_8
34.3
MONOCYTES_9
34.1
MONOCYTES_10
34.1
MONOCYTES_11
34.0
MONOCYTES_12
34.0
MONOCYTES_13
33.9
MONOCYTES_14
33.9
MONOCYTES_15
33.9
MONOCYTES_16
33.2
MONOCYTES_17
33.1
MONOCYTES_18
32.9
MONOCYTES_19
32.7
MONOCYTES_20
32.6
MONOCYTES_21
32.5
MONOCYTES_22
32.3
MONOCYTES_23
31.0
MONOCYTES_24
31.0
MONOCYTES_25
30.9
MONOCYTES_26
30.8
MONOCYTES_27
30.4
MONOCYTES_28
30.1
MONOCYTES_29
29.9
MONOCYTES_30
29.8
MONOCYTES_31
29.7
MONOCYTES_32
29.7
MONOCYTES_33
29.5
MONOCYTES_34
29.5
MONOCYTES_35
29.2
MONOCYTES_36
29.1
MONOCYTES_37
28.7
MONOCYTES_38
28.7
MONOCYTES_39
28.6
MONOCYTES_40
28.3
MONOCYTES_41
28.1
MONOCYTES_42
27.9
MONOCYTES_43
27.7
MONOCYTES_44
27.6
MONOCYTES_45
27.6
MONOCYTES_46
27.2
MONOCYTES_47
27.2
MONOCYTES_48
27.1
MONOCYTES_49
27.0
MONOCYTES_50
27.0
MONOCYTES_51
26.9
MONOCYTES_52
26.8
MONOCYTES_53
26.5
MONOCYTES_54
26.5
MONOCYTES_55
26.5
MONOCYTES_56
26.0
MONOCYTES_57
25.8
MONOCYTES_58
25.6
MONOCYTES_59
25.5
MONOCYTES_60
25.2
MONOCYTES_61
25.2
MONOCYTES_62
25.1
MONOCYTES_63
25.0
MONOCYTES_64
25.0
MONOCYTES_65
24.9
MONOCYTES_66
24.8
MONOCYTES_67
24.6
MONOCYTES_68
23.8
MONOCYTES_69
23.5
MONOCYTES_70
23.4
MONOCYTES_71
23.4
MONOCYTES_72
23.2
MONOCYTES_73
23.2
MONOCYTES_74
23.1
MONOCYTES_75
22.9
MONOCYTES_76
22.7
MONOCYTES_77
22.7
MONOCYTES_78
22.2
MONOCYTES_79
22.2
MONOCYTES_80
22.0
MONOCYTES_81
21.6
MONOCYTES_82
21.5
MONOCYTES_83
20.9
MONOCYTES_84
20.5
MONOCYTES_85
20.4
MONOCYTES_86
20.2
MONOCYTES_87
19.6
MONOCYTES_88
19.3
MONOCYTES_89
19.1
MONOCYTES_90
17.0
MONOCYTES_91
15.7
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Non-classical monocyte TPM: 26.8
Samples: 90
Max TPM: 38.1
Min TPM: 14.2
M2_1
38.1
M2_2
36.0
M2_3
34.6
M2_4
34.5
M2_5
33.4
M2_6
33.1
M2_7
33.1
M2_8
32.8
M2_9
32.7
M2_10
32.7
M2_11
32.6
M2_12
32.5
M2_13
32.3
M2_14
32.3
M2_15
32.1
M2_16
32.0
M2_17
31.5
M2_18
31.3
M2_19
31.0
M2_20
30.8
M2_21
30.8
M2_22
30.7
M2_23
30.5
M2_24
29.9
M2_25
29.7
M2_26
29.6
M2_27
29.3
M2_28
29.3
M2_29
29.3
M2_30
28.5
M2_31
28.4
M2_32
28.4
M2_33
28.4
M2_34
28.2
M2_35
28.1
M2_36
27.9
M2_37
27.6
M2_38
27.5
M2_39
27.4
M2_40
27.3
M2_41
27.2
M2_42
27.2
M2_43
27.0
M2_44
27.0
M2_45
26.7
M2_46
26.7
M2_47
26.5
M2_48
26.4
M2_49
26.0
M2_50
25.8
M2_51
25.8
M2_52
25.7
M2_53
25.7
M2_54
25.6
M2_55
25.6
M2_56
25.5
M2_57
25.4
M2_58
25.3
M2_59
25.2
M2_60
25.2
M2_61
25.0
M2_62
24.3
M2_63
24.3
M2_64
24.2
M2_65
24.1
M2_66
24.1
M2_67
23.7
M2_68
23.5
M2_69
23.4
M2_70
23.2
M2_71
23.2
M2_72
22.9
M2_73
22.8
M2_74
22.7
M2_75
22.6
M2_76
22.3
M2_77
22.0
M2_78
21.7
M2_79
21.5
M2_80
21.3
M2_81
21.2
M2_82
20.9
M2_83
20.8
M2_84
20.1
M2_85
19.8
M2_86
19.4
M2_87
19.1
M2_88
18.2
M2_89
16.7
M2_90
14.2
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