On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
69.3
nTPM
HPA Brain:
105.0
nTPM
GTEx:
69.3
nTPM
FANTOM5:
16.0
Scaled Tags Per Million
Macaque:
15.0
nTPM
Mouse:
6.2
nTPM
Rat:
11.2
nTPM
Pig:
11.4
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
25952
Sample
Intensity
Spinal cord_01
25471
Spinal cord_02
19270
Spinal cord_03
49661
Spinal cord_04
26432
Spinal cord_05
30194
Spinal cord_06
44843
Spinal cord_07
20470
Spinal cord_08
12012
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.0
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 53.7
2818
Female, age 79, both hemispheres
75.9
2193
Male, age 75, both hemispheres
54.2
2734
Male, age 80, both hemispheres
47.9
2819
Male, age 47, both hemispheres
36.6
Cervical spinal cord, central gray nTPM: 42.8
1981
Female, age 72, midline
64.9
2048
Male, age 55, midline
46.3
2816
Male, age 47, midline
35.8
2565
Male, age 75, midline
34.5
2194
Female, age 79, both hemispheres
32.6
Cervical spinal cord, dorsal horn nTPM: 40.8
2173
Female, age 72, unknown
56.3
1877
Male, age 55, unknown
55.9
2069
Male, age 47, both hemispheres
52.5
2721
Male, age 90, both hemispheres
37.9
2297
Male, age 75, both hemispheres
21.3
2296
Male, age 66, both hemispheres
20.9
Cervical spinal cord, ventral horn nTPM: 58.2
2098
Female, age 72, unknown
117.5
2809
Male, age 90, both hemispheres
81.2
2295
Male, age 66, both hemispheres
62.0
2068
Male, age 55, unknown
33.3
2480
Male, age 75, both hemispheres
29.3
2820
Female, age 79, both hemispheres
26.1
Dorsal funiculus (white matter) nTPM: 48.7
2064
Female, age 79, both hemispheres
66.3
2817
Male, age 47, both hemispheres
54.9
2128
Male, age 75, both hemispheres
49.6
2810
Male, age 90, both hemispheres
43.9
2812
Male, age 66, both hemispheres
28.7
Lateral funiculus (white matter) nTPM: 105.0
2294
Male, age 66, both hemispheres
211.2
2192
Male, age 75, both hemispheres
80.4
2094
Female, age 79, both hemispheres
68.7
2099
Male, age 90, both hemispheres
59.8
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
69.3
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 69.3
Samples: 204
Max nTPM: 1063.2
Min nTPM: 9.2
Std nTPM: 82.0
Median nTPM: 55.4
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1063.2
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
285.0
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
249.1
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
242.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
215.1
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
197.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
186.0
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
169.0
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
166.6
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
157.2
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
157.0
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
143.5
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
131.9
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
129.0
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
126.1
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
124.2
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
115.3
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
113.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
113.6
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
112.9
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
112.3
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
112.3
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
109.5
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
107.3
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
106.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
106.3
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
105.8
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
104.8
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
104.1
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
103.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
102.2
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
102.1
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
100.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
98.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
96.8
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
96.2
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
94.5
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
94.2
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
92.1
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
92.0
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
91.7
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
91.7
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
91.0
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
90.9
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
90.6
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
90.3
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
89.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
87.6
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
87.1
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
86.2
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
81.3
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
80.2
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
77.7
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
77.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
77.2
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
77.0
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
76.6
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
75.0
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
74.8
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
74.2
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
73.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
73.4
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
73.3
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
72.9
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
72.7
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
71.4
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
71.0
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
70.4
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
70.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
69.1
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
68.6
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
68.1
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
68.0
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
67.0
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
67.0
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
66.9
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
65.8
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
65.3
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
65.1
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
64.3
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
63.7
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
63.5
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
63.5
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
62.6
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
62.3
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
61.9
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
60.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
60.6
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
60.5
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
60.4
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
59.6
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
59.4
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
59.1
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
58.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
58.4
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
57.4
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
57.3
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
56.6
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
56.5
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
56.3
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
56.1
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
55.9
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
54.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
54.2
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
53.0
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
53.0
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
52.9
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
50.8
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
50.6
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
49.9
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
49.3
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
49.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
47.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
47.4
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
46.7
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
46.7
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
46.6
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
46.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
46.3
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
46.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
46.2
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
45.9
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
45.8
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
45.5
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
45.4
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
45.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
45.2
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
44.8
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
44.2
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
43.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
42.5
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
41.0
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
40.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
39.9
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
39.8
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
39.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
39.4
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
39.1
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
39.1
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
38.8
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
38.6
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
38.2
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
38.0
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
37.6
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
37.4
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
37.2
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
37.2
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
37.0
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
36.8
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
36.5
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
36.5
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
36.4
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
36.1
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
35.5
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
35.5
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
35.5
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
35.0
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
34.6
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
34.2
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
33.4
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
32.6
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
32.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
32.3
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
32.3
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
30.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
29.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
29.7
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
29.6
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
29.2
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
29.2
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
28.9
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
28.9
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
28.7
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
28.7
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
28.3
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
28.2
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
28.2
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
27.7
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
27.2
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
26.9
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
26.1
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
26.1
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
24.9
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
24.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
24.1
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
22.8
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
22.8
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
22.1
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
21.6
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
21.4
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
21.0
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
20.3
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
20.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
18.7
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
18.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
18.2
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
18.1
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
16.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
15.8
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
15.7
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
15.1
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
14.9
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
12.7
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
9.2
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.0
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 13.3
Samples: 2
Max nTPM: 13.8
Min nTPM: 12.7
Sample A
12.7
Sample B
13.8
Ventral spinal cord nTPM: 15.0
Samples: 1
Max nTPM: 15.0
Min nTPM: 15.0
Sample A
15.0
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.4
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 11.3
Samples: 4
Max nTPM: 21.7
Min nTPM: 5.3
Sample A
Female
5.3
Sample B
Female
11.3
Sample C
Male
21.7
Sample D
Male
7.0
Ventral spinal cord nTPM: 8.5
Samples: 4
Max nTPM: 12.3
Min nTPM: 5.7
Sample A
Female
5.7
Sample B
Female
7.6
Sample C
Male
12.3
Sample D
Male
8.4
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.2
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 6.2
Samples: 4
Max nTPM: 8.4
Min nTPM: 3.8
Sample A
5.0
Sample B
7.7
Sample C
8.4
Sample D
3.8
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.2
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 11.3
Samples: 4
Max nTPM: 14.9
Min nTPM: 7.4
Sample A
7.4
Sample A
10.6
Sample A
14.9
Sample A
12.1
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The Human Protein Atlas project is funded
