A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
87.4
nTPM
Monaco:
479.9
nTPM
Schmiedel:
472.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
87.4
HPA sample
nTPM
Memory B-cell nTPM: 72.0
Samples: 6
Max nTPM: 138.9
Min nTPM: 40.5
P10809_1017
40.5
P10809_1025
50.6
P10809_1044
138.9
P10809_1063
60.4
P10809_1092
69.5
P10809_1105
72.1
Naive B-cell nTPM: 87.4
Samples: 6
Max nTPM: 110.7
Min nTPM: 48.4
P10809_1011
48.4
P10809_1029
110.7
P10809_1048
103.3
P10809_1067
109.8
P10809_1091
75.9
P10809_1104
76.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
479.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 479.9
Samples: 4
Max nTPM: 537.7
Min nTPM: 386.0
RHH5310_R3677
386.0
RHH5218_R3590
537.7
RHH5247_R3619
529.3
RHH5276_R3648
466.7
Naive B-cell nTPM: 431.7
Samples: 4
Max nTPM: 488.8
Min nTPM: 352.0
RHH5308_R3675
421.8
RHH5216_R3588
352.0
RHH5245_R3617
464.4
RHH5274_R3646
488.8
Non-switched memory B-cell nTPM: 350.0
Samples: 4
Max nTPM: 426.9
Min nTPM: 306.7
RHH5309_R3676
316.7
RHH5217_R3589
306.7
RHH5246_R3618
426.9
RHH5275_R3647
349.5
Plasmablast nTPM: 70.4
Samples: 4
Max nTPM: 86.6
Min nTPM: 59.4
RHH5312_R3679
67.1
RHH5220_R3592
59.4
RHH5249_R3621
68.6
RHH5278_R3650
86.6
Switched memory B-cell nTPM: 346.8
Samples: 4
Max nTPM: 377.2
Min nTPM: 280.5
RHH5311_R3678
377.2
RHH5219_R3591
280.5
RHH5248_R3620
356.4
RHH5277_R3649
373.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
472.6
Schmiedel sample id
TPM
Naive B-cell TPM: 472.6
Samples: 91
Max TPM: 680.7
Min TPM: 333.9
B_CELL_NAIVE_1
680.7
B_CELL_NAIVE_2
642.1
B_CELL_NAIVE_3
620.0
B_CELL_NAIVE_4
585.4
B_CELL_NAIVE_5
584.0
B_CELL_NAIVE_6
582.3
B_CELL_NAIVE_7
579.7
B_CELL_NAIVE_8
571.7
B_CELL_NAIVE_9
562.0
B_CELL_NAIVE_10
556.6
B_CELL_NAIVE_11
551.5
B_CELL_NAIVE_12
549.7
B_CELL_NAIVE_13
548.2
B_CELL_NAIVE_14
546.5
B_CELL_NAIVE_15
541.4
B_CELL_NAIVE_16
537.2
B_CELL_NAIVE_17
533.5
B_CELL_NAIVE_18
533.3
B_CELL_NAIVE_19
532.3
B_CELL_NAIVE_20
530.5
B_CELL_NAIVE_21
529.6
B_CELL_NAIVE_22
529.4
B_CELL_NAIVE_23
527.7
B_CELL_NAIVE_24
527.5
B_CELL_NAIVE_25
518.3
B_CELL_NAIVE_26
516.5
B_CELL_NAIVE_27
514.7
B_CELL_NAIVE_28
514.6
B_CELL_NAIVE_29
513.5
B_CELL_NAIVE_30
511.6
B_CELL_NAIVE_31
509.8
B_CELL_NAIVE_32
506.5
B_CELL_NAIVE_33
505.9
B_CELL_NAIVE_34
505.7
B_CELL_NAIVE_35
499.8
B_CELL_NAIVE_36
498.4
B_CELL_NAIVE_37
496.5
B_CELL_NAIVE_38
495.5
B_CELL_NAIVE_39
494.6
B_CELL_NAIVE_40
490.7
B_CELL_NAIVE_41
481.2
B_CELL_NAIVE_42
477.6
B_CELL_NAIVE_43
471.8
B_CELL_NAIVE_44
471.0
B_CELL_NAIVE_45
467.4
B_CELL_NAIVE_46
464.2
B_CELL_NAIVE_47
463.0
B_CELL_NAIVE_48
461.4
B_CELL_NAIVE_49
460.8
B_CELL_NAIVE_50
457.5
B_CELL_NAIVE_51
455.2
B_CELL_NAIVE_52
454.3
B_CELL_NAIVE_53
453.4
B_CELL_NAIVE_54
451.8
B_CELL_NAIVE_55
451.1
B_CELL_NAIVE_56
450.8
B_CELL_NAIVE_57
449.8
B_CELL_NAIVE_58
449.0
B_CELL_NAIVE_59
448.4
B_CELL_NAIVE_60
445.1
B_CELL_NAIVE_61
444.7
B_CELL_NAIVE_62
444.4
B_CELL_NAIVE_63
431.6
B_CELL_NAIVE_64
429.0
B_CELL_NAIVE_65
423.6
B_CELL_NAIVE_66
422.0
B_CELL_NAIVE_67
418.7
B_CELL_NAIVE_68
410.2
B_CELL_NAIVE_69
408.1
B_CELL_NAIVE_70
407.3
B_CELL_NAIVE_71
406.7
B_CELL_NAIVE_72
406.7
B_CELL_NAIVE_73
406.2
B_CELL_NAIVE_74
403.9
B_CELL_NAIVE_75
403.6
B_CELL_NAIVE_76
400.3
B_CELL_NAIVE_77
400.1
B_CELL_NAIVE_78
399.2
B_CELL_NAIVE_79
390.4
B_CELL_NAIVE_80
388.4
B_CELL_NAIVE_81
388.3
B_CELL_NAIVE_82
383.1
B_CELL_NAIVE_83
382.3
B_CELL_NAIVE_84
375.8
B_CELL_NAIVE_85
367.8
B_CELL_NAIVE_86
367.2
B_CELL_NAIVE_87
359.6
B_CELL_NAIVE_88
356.4
B_CELL_NAIVE_89
343.3
B_CELL_NAIVE_90
341.6
B_CELL_NAIVE_91
333.9
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