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BETA
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  • ADAM28
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:87.4 nTPM
Monaco:479.9 nTPM
Schmiedel:472.6 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

87.4
HPA sample nTPM
Memory B-cell
nTPM: 72.0
Samples: 6

Max nTPM: 138.9
Min nTPM: 40.5
P10809_1017 40.5
P10809_1025 50.6
P10809_1044 138.9
P10809_1063 60.4
P10809_1092 69.5
P10809_1105 72.1
Naive B-cell
nTPM: 87.4
Samples: 6

Max nTPM: 110.7
Min nTPM: 48.4
P10809_1011 48.4
P10809_1029 110.7
P10809_1048 103.3
P10809_1067 109.8
P10809_1091 75.9
P10809_1104 76.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

479.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 479.9
Samples: 4

Max nTPM: 537.7
Min nTPM: 386.0
RHH5310_R3677 386.0
RHH5218_R3590 537.7
RHH5247_R3619 529.3
RHH5276_R3648 466.7
Naive B-cell
nTPM: 431.7
Samples: 4

Max nTPM: 488.8
Min nTPM: 352.0
RHH5308_R3675 421.8
RHH5216_R3588 352.0
RHH5245_R3617 464.4
RHH5274_R3646 488.8
Non-switched memory B-cell
nTPM: 350.0
Samples: 4

Max nTPM: 426.9
Min nTPM: 306.7
RHH5309_R3676 316.7
RHH5217_R3589 306.7
RHH5246_R3618 426.9
RHH5275_R3647 349.5
Plasmablast
nTPM: 70.4
Samples: 4

Max nTPM: 86.6
Min nTPM: 59.4
RHH5312_R3679 67.1
RHH5220_R3592 59.4
RHH5249_R3621 68.6
RHH5278_R3650 86.6
Switched memory B-cell
nTPM: 346.8
Samples: 4

Max nTPM: 377.2
Min nTPM: 280.5
RHH5311_R3678 377.2
RHH5219_R3591 280.5
RHH5248_R3620 356.4
RHH5277_R3649 373.1

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

472.6
Schmiedel sample id TPM
Naive B-cell
TPM: 472.6
Samples: 91

Max TPM: 680.7
Min TPM: 333.9
B_CELL_NAIVE_1 680.7
B_CELL_NAIVE_2 642.1
B_CELL_NAIVE_3 620.0
B_CELL_NAIVE_4 585.4
B_CELL_NAIVE_5 584.0
B_CELL_NAIVE_6 582.3
B_CELL_NAIVE_7 579.7
B_CELL_NAIVE_8 571.7
B_CELL_NAIVE_9 562.0
B_CELL_NAIVE_10 556.6
B_CELL_NAIVE_11 551.5
B_CELL_NAIVE_12 549.7
B_CELL_NAIVE_13 548.2
B_CELL_NAIVE_14 546.5
B_CELL_NAIVE_15 541.4
B_CELL_NAIVE_16 537.2
B_CELL_NAIVE_17 533.5
B_CELL_NAIVE_18 533.3
B_CELL_NAIVE_19 532.3
B_CELL_NAIVE_20 530.5
B_CELL_NAIVE_21 529.6
B_CELL_NAIVE_22 529.4
B_CELL_NAIVE_23 527.7
B_CELL_NAIVE_24 527.5
B_CELL_NAIVE_25 518.3
B_CELL_NAIVE_26 516.5
B_CELL_NAIVE_27 514.7
B_CELL_NAIVE_28 514.6
B_CELL_NAIVE_29 513.5
B_CELL_NAIVE_30 511.6
B_CELL_NAIVE_31 509.8
B_CELL_NAIVE_32 506.5
B_CELL_NAIVE_33 505.9
B_CELL_NAIVE_34 505.7
B_CELL_NAIVE_35 499.8
B_CELL_NAIVE_36 498.4
B_CELL_NAIVE_37 496.5
B_CELL_NAIVE_38 495.5
B_CELL_NAIVE_39 494.6
B_CELL_NAIVE_40 490.7
B_CELL_NAIVE_41 481.2
B_CELL_NAIVE_42 477.6
B_CELL_NAIVE_43 471.8
B_CELL_NAIVE_44 471.0
B_CELL_NAIVE_45 467.4
B_CELL_NAIVE_46 464.2
B_CELL_NAIVE_47 463.0
B_CELL_NAIVE_48 461.4
B_CELL_NAIVE_49 460.8
B_CELL_NAIVE_50 457.5
B_CELL_NAIVE_51 455.2
B_CELL_NAIVE_52 454.3
B_CELL_NAIVE_53 453.4
B_CELL_NAIVE_54 451.8
B_CELL_NAIVE_55 451.1
B_CELL_NAIVE_56 450.8
B_CELL_NAIVE_57 449.8
B_CELL_NAIVE_58 449.0
B_CELL_NAIVE_59 448.4
B_CELL_NAIVE_60 445.1
B_CELL_NAIVE_61 444.7
B_CELL_NAIVE_62 444.4
B_CELL_NAIVE_63 431.6
B_CELL_NAIVE_64 429.0
B_CELL_NAIVE_65 423.6
B_CELL_NAIVE_66 422.0
B_CELL_NAIVE_67 418.7
B_CELL_NAIVE_68 410.2
B_CELL_NAIVE_69 408.1
B_CELL_NAIVE_70 407.3
B_CELL_NAIVE_71 406.7
B_CELL_NAIVE_72 406.7
B_CELL_NAIVE_73 406.2
B_CELL_NAIVE_74 403.9
B_CELL_NAIVE_75 403.6
B_CELL_NAIVE_76 400.3
B_CELL_NAIVE_77 400.1
B_CELL_NAIVE_78 399.2
B_CELL_NAIVE_79 390.4
B_CELL_NAIVE_80 388.4
B_CELL_NAIVE_81 388.3
B_CELL_NAIVE_82 383.1
B_CELL_NAIVE_83 382.3
B_CELL_NAIVE_84 375.8
B_CELL_NAIVE_85 367.8
B_CELL_NAIVE_86 367.2
B_CELL_NAIVE_87 359.6
B_CELL_NAIVE_88 356.4
B_CELL_NAIVE_89 343.3
B_CELL_NAIVE_90 341.6
B_CELL_NAIVE_91 333.9
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