A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.7
nTPM
Monaco:
22.6
nTPM
Schmiedel:
14.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.7
HPA sample
nTPM
NK-cell nTPM: 2.8
Samples: 6
Max nTPM: 5.0
Min nTPM: 0.0
P10809_1013
2.7
P10809_1033
5.0
P10809_1052
4.2
P10809_1071
0.0
P10809_1093
2.1
P10809_1103
2.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.6
Monaco sample
nTPM
NK-cell nTPM: 22.6
Samples: 4
Max nTPM: 27.2
Min nTPM: 16.3
RHH5316_R3683
16.3
RHH5224_R3596
27.2
RHH5253_R3625
25.0
RHH5282_R3654
21.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.8
Schmiedel sample id
TPM
NK-cell TPM: 14.8
Samples: 90
Max TPM: 29.1
Min TPM: 4.3
NK_1
29.1
NK_2
26.7
NK_3
26.1
NK_4
26.0
NK_5
25.5
NK_6
23.4
NK_7
23.0
NK_8
22.5
NK_9
22.0
NK_10
21.1
NK_11
21.1
NK_12
21.1
NK_13
20.9
NK_14
20.1
NK_15
20.0
NK_16
19.3
NK_17
19.1
NK_18
19.1
NK_19
18.9
NK_20
18.5
NK_21
18.5
NK_22
18.5
NK_23
18.3
NK_24
18.0
NK_25
17.6
NK_26
17.1
NK_27
17.0
NK_28
16.9
NK_29
16.8
NK_30
16.6
NK_31
16.4
NK_32
16.4
NK_33
16.3
NK_34
16.2
NK_35
16.2
NK_36
16.2
NK_37
16.0
NK_38
15.8
NK_39
15.3
NK_40
15.0
NK_41
14.9
NK_42
14.8
NK_43
14.7
NK_44
14.6
NK_45
14.2
NK_46
14.1
NK_47
13.8
NK_48
13.7
NK_49
13.7
NK_50
13.7
NK_51
13.2
NK_52
12.9
NK_53
12.9
NK_54
12.8
NK_55
12.6
NK_56
12.6
NK_57
12.5
NK_58
12.5
NK_59
12.0
NK_60
12.0
NK_61
11.9
NK_62
11.9
NK_63
11.9
NK_64
11.8
NK_65
11.7
NK_66
11.5
NK_67
10.7
NK_68
10.7
NK_69
10.7
NK_70
10.6
NK_71
10.5
NK_72
10.5
NK_73
10.3
NK_74
10.2
NK_75
10.2
NK_76
10.1
NK_77
9.7
NK_78
9.6
NK_79
9.6
NK_80
9.4
NK_81
9.3
NK_82
9.1
NK_83
8.8
NK_84
8.5
NK_85
8.3
NK_86
7.8
NK_87
7.7
NK_88
5.1
NK_89
4.8
NK_90
4.3
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