A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
41.9
nTPM
Monaco:
160.9
nTPM
Schmiedel:
271.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.9
HPA sample
nTPM
NK-cell nTPM: 41.9
Samples: 6
Max nTPM: 79.8
Min nTPM: 25.4
P10809_1013
37.9
P10809_1033
25.4
P10809_1052
38.9
P10809_1071
35.0
P10809_1093
79.8
P10809_1103
34.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
160.9
Monaco sample
nTPM
NK-cell nTPM: 160.9
Samples: 4
Max nTPM: 216.2
Min nTPM: 140.8
RHH5316_R3683
140.8
RHH5224_R3596
216.2
RHH5253_R3625
143.3
RHH5282_R3654
143.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
271.1
Schmiedel sample id
TPM
NK-cell TPM: 271.1
Samples: 90
Max TPM: 348.9
Min TPM: 213.8
NK_1
348.9
NK_2
327.9
NK_3
323.7
NK_4
314.1
NK_5
313.5
NK_6
312.9
NK_7
309.6
NK_8
307.4
NK_9
305.4
NK_10
302.1
NK_11
301.1
NK_12
301.0
NK_13
300.7
NK_14
300.4
NK_15
293.3
NK_16
292.3
NK_17
289.3
NK_18
288.1
NK_19
287.1
NK_20
286.3
NK_21
286.3
NK_22
286.1
NK_23
284.8
NK_24
284.3
NK_25
283.4
NK_26
281.6
NK_27
281.6
NK_28
281.2
NK_29
281.0
NK_30
279.7
NK_31
279.3
NK_32
278.7
NK_33
278.6
NK_34
278.0
NK_35
277.6
NK_36
277.4
NK_37
275.6
NK_38
275.1
NK_39
275.0
NK_40
274.3
NK_41
273.5
NK_42
272.8
NK_43
272.7
NK_44
271.2
NK_45
270.5
NK_46
270.2
NK_47
270.2
NK_48
269.5
NK_49
269.4
NK_50
268.4
NK_51
268.3
NK_52
268.1
NK_53
267.5
NK_54
267.2
NK_55
267.2
NK_56
267.1
NK_57
265.4
NK_58
264.8
NK_59
262.5
NK_60
261.9
NK_61
261.7
NK_62
261.6
NK_63
260.2
NK_64
259.7
NK_65
257.7
NK_66
257.1
NK_67
256.8
NK_68
256.5
NK_69
256.4
NK_70
254.8
NK_71
254.5
NK_72
254.0
NK_73
253.2
NK_74
249.7
NK_75
249.6
NK_76
244.1
NK_77
243.8
NK_78
242.1
NK_79
241.0
NK_80
237.9
NK_81
236.9
NK_82
236.7
NK_83
233.1
NK_84
232.7
NK_85
232.2
NK_86
228.9
NK_87
226.7
NK_88
215.8
NK_89
214.3
NK_90
213.8
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