A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
66.2
nTPM
Monaco:
305.5
nTPM
Schmiedel:
314.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.2
HPA sample
nTPM
Classical monocyte nTPM: 20.4
Samples: 6
Max nTPM: 26.8
Min nTPM: 14.4
P10809_1003
26.8
P10809_1020
16.9
P10809_1039
26.4
P10809_1058
14.4
P10809_1080
19.6
P10809_1107
18.4
Intermediate monocyte nTPM: 42.5
Samples: 6
Max nTPM: 65.3
Min nTPM: 29.7
P10809_1004
65.3
P10809_1023
37.7
P10809_1042
47.0
P10809_1061
38.3
P10809_1081
29.7
P10809_1108
37.2
Non-classical monocyte nTPM: 66.1
Samples: 5
Max nTPM: 102.5
Min nTPM: 32.0
P10809_1005
66.6
P10809_1053
82.9
P10809_1072
102.5
P10809_1082
32.0
P10809_1109
46.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
305.5
Monaco sample
nTPM
Classical monocyte nTPM: 150.6
Samples: 4
Max nTPM: 231.8
Min nTPM: 119.0
RHH5313_R3680
131.5
RHH5221_R3593
231.8
RHH5250_R3622
120.0
RHH5279_R3651
119.0
Intermediate monocyte nTPM: 262.6
Samples: 4
Max nTPM: 426.5
Min nTPM: 181.0
RHH5314_R3681
181.0
RHH5222_R3594
426.5
RHH5251_R3623
239.6
RHH5280_R3652
203.3
Non-classical monocyte nTPM: 305.5
Samples: 4
Max nTPM: 545.2
Min nTPM: 209.1
RHH5315_R3682
237.2
RHH5223_R3595
545.2
RHH5252_R3624
230.5
RHH5281_R3653
209.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
314.5
Schmiedel sample id
TPM
Classical monocyte TPM: 147.7
Samples: 91
Max TPM: 288.4
Min TPM: 105.3
MONOCYTES_1
288.4
MONOCYTES_2
200.2
MONOCYTES_3
197.4
MONOCYTES_4
187.2
MONOCYTES_5
186.2
MONOCYTES_6
183.6
MONOCYTES_7
181.9
MONOCYTES_8
181.6
MONOCYTES_9
178.4
MONOCYTES_10
175.4
MONOCYTES_11
175.3
MONOCYTES_12
172.9
MONOCYTES_13
172.7
MONOCYTES_14
170.7
MONOCYTES_15
169.1
MONOCYTES_16
168.0
MONOCYTES_17
164.2
MONOCYTES_18
163.8
MONOCYTES_19
162.9
MONOCYTES_20
162.6
MONOCYTES_21
161.8
MONOCYTES_22
161.8
MONOCYTES_23
161.8
MONOCYTES_24
161.8
MONOCYTES_25
161.1
MONOCYTES_26
161.0
MONOCYTES_27
160.7
MONOCYTES_28
160.2
MONOCYTES_29
159.4
MONOCYTES_30
158.6
MONOCYTES_31
158.3
MONOCYTES_32
156.2
MONOCYTES_33
156.0
MONOCYTES_34
155.8
MONOCYTES_35
154.9
MONOCYTES_36
154.0
MONOCYTES_37
153.3
MONOCYTES_38
153.1
MONOCYTES_39
147.0
MONOCYTES_40
146.1
MONOCYTES_41
145.5
MONOCYTES_42
144.9
MONOCYTES_43
144.3
MONOCYTES_44
143.7
MONOCYTES_45
142.9
MONOCYTES_46
141.9
MONOCYTES_47
141.5
MONOCYTES_48
141.4
MONOCYTES_49
140.0
MONOCYTES_50
139.8
MONOCYTES_51
139.2
MONOCYTES_52
139.2
MONOCYTES_53
138.7
MONOCYTES_54
138.4
MONOCYTES_55
136.7
MONOCYTES_56
136.0
MONOCYTES_57
135.9
MONOCYTES_58
135.4
MONOCYTES_59
134.8
MONOCYTES_60
134.8
MONOCYTES_61
133.9
MONOCYTES_62
133.7
MONOCYTES_63
132.7
MONOCYTES_64
131.8
MONOCYTES_65
131.5
MONOCYTES_66
131.4
MONOCYTES_67
131.1
MONOCYTES_68
130.5
MONOCYTES_69
130.1
MONOCYTES_70
130.1
MONOCYTES_71
128.9
MONOCYTES_72
128.4
MONOCYTES_73
128.2
MONOCYTES_74
127.8
MONOCYTES_75
126.2
MONOCYTES_76
125.7
MONOCYTES_77
124.5
MONOCYTES_78
124.0
MONOCYTES_79
123.7
MONOCYTES_80
122.7
MONOCYTES_81
121.6
MONOCYTES_82
120.3
MONOCYTES_83
118.7
MONOCYTES_84
118.4
MONOCYTES_85
118.2
MONOCYTES_86
117.7
MONOCYTES_87
117.6
MONOCYTES_88
117.2
MONOCYTES_89
115.0
MONOCYTES_90
109.8
MONOCYTES_91
105.3
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Non-classical monocyte TPM: 314.5
Samples: 90
Max TPM: 469.7
Min TPM: 240.9
M2_1
469.7
M2_2
436.8
M2_3
390.9
M2_4
389.6
M2_5
383.7
M2_6
382.7
M2_7
380.6
M2_8
379.5
M2_9
369.9
M2_10
369.6
M2_11
366.7
M2_12
364.7
M2_13
354.4
M2_14
348.4
M2_15
348.2
M2_16
347.9
M2_17
347.4
M2_18
347.1
M2_19
346.2
M2_20
344.9
M2_21
342.3
M2_22
340.3
M2_23
338.7
M2_24
337.8
M2_25
336.7
M2_26
335.1
M2_27
330.5
M2_28
330.4
M2_29
328.3
M2_30
325.5
M2_31
324.9
M2_32
320.8
M2_33
320.3
M2_34
320.1
M2_35
319.5
M2_36
317.6
M2_37
316.9
M2_38
315.3
M2_39
314.0
M2_40
313.8
M2_41
312.4
M2_42
312.2
M2_43
311.3
M2_44
310.4
M2_45
309.9
M2_46
309.2
M2_47
308.1
M2_48
306.9
M2_49
306.2
M2_50
305.8
M2_51
304.6
M2_52
302.4
M2_53
301.8
M2_54
299.6
M2_55
299.6
M2_56
299.3
M2_57
298.9
M2_58
298.0
M2_59
297.3
M2_60
296.5
M2_61
295.4
M2_62
294.2
M2_63
292.3
M2_64
292.1
M2_65
289.2
M2_66
287.3
M2_67
285.3
M2_68
285.1
M2_69
285.0
M2_70
283.6
M2_71
282.6
M2_72
282.3
M2_73
281.8
M2_74
281.6
M2_75
280.6
M2_76
273.4
M2_77
273.2
M2_78
273.0
M2_79
271.6
M2_80
270.4
M2_81
267.7
M2_82
267.1
M2_83
267.1
M2_84
264.1
M2_85
261.0
M2_86
255.9
M2_87
245.8
M2_88
243.4
M2_89
242.6
M2_90
240.9
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