A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.7
nTPM
Monaco:
16.8
nTPM
Schmiedel:
36.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.7
HPA sample
nTPM
Memory B-cell nTPM: 1.6
Samples: 6
Max nTPM: 2.8
Min nTPM: 0.1
P10809_1017
2.1
P10809_1025
2.8
P10809_1044
0.1
P10809_1063
1.0
P10809_1092
2.2
P10809_1105
1.2
Naive B-cell nTPM: 1.7
Samples: 6
Max nTPM: 2.8
Min nTPM: 0.0
P10809_1011
2.1
P10809_1029
2.8
P10809_1048
0.0
P10809_1067
1.5
P10809_1091
2.2
P10809_1104
1.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 15.9
Samples: 4
Max nTPM: 19.9
Min nTPM: 12.1
RHH5310_R3677
13.2
RHH5218_R3590
18.5
RHH5247_R3619
19.9
RHH5276_R3648
12.1
Naive B-cell nTPM: 15.8
Samples: 4
Max nTPM: 19.9
Min nTPM: 13.0
RHH5308_R3675
13.2
RHH5216_R3588
17.1
RHH5245_R3617
19.9
RHH5274_R3646
13.0
Non-switched memory B-cell nTPM: 14.5
Samples: 4
Max nTPM: 16.0
Min nTPM: 13.5
RHH5309_R3676
16.0
RHH5217_R3589
14.3
RHH5246_R3618
13.5
RHH5275_R3647
14.2
Plasmablast nTPM: 9.5
Samples: 4
Max nTPM: 11.0
Min nTPM: 7.7
RHH5312_R3679
9.7
RHH5220_R3592
9.4
RHH5249_R3621
7.7
RHH5278_R3650
11.0
Switched memory B-cell nTPM: 16.8
Samples: 4
Max nTPM: 22.1
Min nTPM: 12.0
RHH5311_R3678
12.0
RHH5219_R3591
17.4
RHH5248_R3620
22.1
RHH5277_R3649
15.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36.6
Schmiedel sample id
TPM
Naive B-cell TPM: 36.6
Samples: 91
Max TPM: 56.4
Min TPM: 28.7
B_CELL_NAIVE_1
56.4
B_CELL_NAIVE_2
43.5
B_CELL_NAIVE_3
43.2
B_CELL_NAIVE_4
42.3
B_CELL_NAIVE_5
42.2
B_CELL_NAIVE_6
42.0
B_CELL_NAIVE_7
42.0
B_CELL_NAIVE_8
41.8
B_CELL_NAIVE_9
41.6
B_CELL_NAIVE_10
41.0
B_CELL_NAIVE_11
40.8
B_CELL_NAIVE_12
40.6
B_CELL_NAIVE_13
40.5
B_CELL_NAIVE_14
40.5
B_CELL_NAIVE_15
40.3
B_CELL_NAIVE_16
40.3
B_CELL_NAIVE_17
40.1
B_CELL_NAIVE_18
40.1
B_CELL_NAIVE_19
40.0
B_CELL_NAIVE_20
39.6
B_CELL_NAIVE_21
39.5
B_CELL_NAIVE_22
39.2
B_CELL_NAIVE_23
39.2
B_CELL_NAIVE_24
39.1
B_CELL_NAIVE_25
39.0
B_CELL_NAIVE_26
39.0
B_CELL_NAIVE_27
38.8
B_CELL_NAIVE_28
38.6
B_CELL_NAIVE_29
38.3
B_CELL_NAIVE_30
38.2
B_CELL_NAIVE_31
37.8
B_CELL_NAIVE_32
37.7
B_CELL_NAIVE_33
37.6
B_CELL_NAIVE_34
37.6
B_CELL_NAIVE_35
37.3
B_CELL_NAIVE_36
37.2
B_CELL_NAIVE_37
37.2
B_CELL_NAIVE_38
37.2
B_CELL_NAIVE_39
37.2
B_CELL_NAIVE_40
37.1
B_CELL_NAIVE_41
37.1
B_CELL_NAIVE_42
37.1
B_CELL_NAIVE_43
37.0
B_CELL_NAIVE_44
36.8
B_CELL_NAIVE_45
36.7
B_CELL_NAIVE_46
36.6
B_CELL_NAIVE_47
36.6
B_CELL_NAIVE_48
36.2
B_CELL_NAIVE_49
36.2
B_CELL_NAIVE_50
36.2
B_CELL_NAIVE_51
36.0
B_CELL_NAIVE_52
35.9
B_CELL_NAIVE_53
35.8
B_CELL_NAIVE_54
35.7
B_CELL_NAIVE_55
35.7
B_CELL_NAIVE_56
35.6
B_CELL_NAIVE_57
35.5
B_CELL_NAIVE_58
35.4
B_CELL_NAIVE_59
35.4
B_CELL_NAIVE_60
35.4
B_CELL_NAIVE_61
35.2
B_CELL_NAIVE_62
35.1
B_CELL_NAIVE_63
35.0
B_CELL_NAIVE_64
35.0
B_CELL_NAIVE_65
34.8
B_CELL_NAIVE_66
34.5
B_CELL_NAIVE_67
34.5
B_CELL_NAIVE_68
34.2
B_CELL_NAIVE_69
34.1
B_CELL_NAIVE_70
33.9
B_CELL_NAIVE_71
33.6
B_CELL_NAIVE_72
33.3
B_CELL_NAIVE_73
33.2
B_CELL_NAIVE_74
33.2
B_CELL_NAIVE_75
33.1
B_CELL_NAIVE_76
32.6
B_CELL_NAIVE_77
32.3
B_CELL_NAIVE_78
32.0
B_CELL_NAIVE_79
31.5
B_CELL_NAIVE_80
31.5
B_CELL_NAIVE_81
31.3
B_CELL_NAIVE_82
31.2
B_CELL_NAIVE_83
30.6
B_CELL_NAIVE_84
30.5
B_CELL_NAIVE_85
30.4
B_CELL_NAIVE_86
30.2
B_CELL_NAIVE_87
30.2
B_CELL_NAIVE_88
29.6
B_CELL_NAIVE_89
29.2
B_CELL_NAIVE_90
29.1
B_CELL_NAIVE_91
28.7
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