A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.8
nTPM
Monaco:
26.1
nTPM
Schmiedel:
30.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.8
HPA sample
nTPM
Classical monocyte nTPM: 3.2
Samples: 6
Max nTPM: 4.9
Min nTPM: 2.2
P10809_1003
4.9
P10809_1020
3.8
P10809_1039
3.0
P10809_1058
2.2
P10809_1080
2.4
P10809_1107
3.1
Intermediate monocyte nTPM: 3.8
Samples: 6
Max nTPM: 5.3
Min nTPM: 2.2
P10809_1004
5.3
P10809_1023
4.7
P10809_1042
2.2
P10809_1061
4.8
P10809_1081
3.0
P10809_1108
2.6
Non-classical monocyte nTPM: 2.5
Samples: 5
Max nTPM: 4.2
Min nTPM: 0.0
P10809_1005
4.2
P10809_1053
3.2
P10809_1072
0.0
P10809_1082
2.3
P10809_1109
3.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.1
Monaco sample
nTPM
Classical monocyte nTPM: 26.1
Samples: 4
Max nTPM: 37.7
Min nTPM: 19.1
RHH5313_R3680
19.1
RHH5221_R3593
37.7
RHH5250_R3622
27.6
RHH5279_R3651
19.9
Intermediate monocyte nTPM: 20.5
Samples: 4
Max nTPM: 27.0
Min nTPM: 16.7
RHH5314_R3681
18.2
RHH5222_R3594
27.0
RHH5251_R3623
20.1
RHH5280_R3652
16.7
Non-classical monocyte nTPM: 20.6
Samples: 4
Max nTPM: 25.1
Min nTPM: 14.5
RHH5315_R3682
19.2
RHH5223_R3595
23.6
RHH5252_R3624
25.1
RHH5281_R3653
14.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.7
Schmiedel sample id
TPM
Classical monocyte TPM: 30.7
Samples: 91
Max TPM: 43.9
Min TPM: 23.2
MONOCYTES_1
43.9
MONOCYTES_2
37.2
MONOCYTES_3
37.2
MONOCYTES_4
35.8
MONOCYTES_5
35.5
MONOCYTES_6
34.7
MONOCYTES_7
34.6
MONOCYTES_8
34.6
MONOCYTES_9
34.4
MONOCYTES_10
34.0
MONOCYTES_11
33.9
MONOCYTES_12
33.7
MONOCYTES_13
33.5
MONOCYTES_14
33.2
MONOCYTES_15
33.2
MONOCYTES_16
33.1
MONOCYTES_17
33.1
MONOCYTES_18
33.1
MONOCYTES_19
32.7
MONOCYTES_20
32.7
MONOCYTES_21
32.7
MONOCYTES_22
32.6
MONOCYTES_23
32.6
MONOCYTES_24
32.4
MONOCYTES_25
32.4
MONOCYTES_26
32.3
MONOCYTES_27
32.2
MONOCYTES_28
32.1
MONOCYTES_29
32.1
MONOCYTES_30
32.0
MONOCYTES_31
32.0
MONOCYTES_32
31.9
MONOCYTES_33
31.7
MONOCYTES_34
31.7
MONOCYTES_35
31.4
MONOCYTES_36
31.3
MONOCYTES_37
31.3
MONOCYTES_38
31.1
MONOCYTES_39
31.0
MONOCYTES_40
30.9
MONOCYTES_41
30.7
MONOCYTES_42
30.6
MONOCYTES_43
30.5
MONOCYTES_44
30.5
MONOCYTES_45
30.5
MONOCYTES_46
30.5
MONOCYTES_47
30.4
MONOCYTES_48
30.4
MONOCYTES_49
30.4
MONOCYTES_50
30.4
MONOCYTES_51
30.4
MONOCYTES_52
30.4
MONOCYTES_53
30.3
MONOCYTES_54
30.2
MONOCYTES_55
30.1
MONOCYTES_56
29.9
MONOCYTES_57
29.9
MONOCYTES_58
29.8
MONOCYTES_59
29.8
MONOCYTES_60
29.8
MONOCYTES_61
29.6
MONOCYTES_62
29.5
MONOCYTES_63
29.5
MONOCYTES_64
29.4
MONOCYTES_65
29.1
MONOCYTES_66
28.9
MONOCYTES_67
28.9
MONOCYTES_68
28.8
MONOCYTES_69
28.8
MONOCYTES_70
28.7
MONOCYTES_71
28.6
MONOCYTES_72
28.6
MONOCYTES_73
28.6
MONOCYTES_74
28.4
MONOCYTES_75
28.3
MONOCYTES_76
28.1
MONOCYTES_77
27.7
MONOCYTES_78
27.6
MONOCYTES_79
27.3
MONOCYTES_80
27.3
MONOCYTES_81
27.0
MONOCYTES_82
27.0
MONOCYTES_83
26.9
MONOCYTES_84
26.8
MONOCYTES_85
26.6
MONOCYTES_86
26.5
MONOCYTES_87
25.8
MONOCYTES_88
25.7
MONOCYTES_89
25.1
MONOCYTES_90
25.0
MONOCYTES_91
23.2
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Non-classical monocyte TPM: 30.6
Samples: 90
Max TPM: 40.4
Min TPM: 23.6
M2_1
40.4
M2_2
37.0
M2_3
36.6
M2_4
36.6
M2_5
36.4
M2_6
36.1
M2_7
35.5
M2_8
35.3
M2_9
34.8
M2_10
34.6
M2_11
34.6
M2_12
34.0
M2_13
33.3
M2_14
33.1
M2_15
33.1
M2_16
32.9
M2_17
32.8
M2_18
32.7
M2_19
32.5
M2_20
32.4
M2_21
32.4
M2_22
32.3
M2_23
32.1
M2_24
32.1
M2_25
32.1
M2_26
32.0
M2_27
31.9
M2_28
31.9
M2_29
31.9
M2_30
31.8
M2_31
31.7
M2_32
31.6
M2_33
31.6
M2_34
31.6
M2_35
31.5
M2_36
31.5
M2_37
31.4
M2_38
31.2
M2_39
31.2
M2_40
30.9
M2_41
30.6
M2_42
30.5
M2_43
30.4
M2_44
30.3
M2_45
30.3
M2_46
30.3
M2_47
30.3
M2_48
30.2
M2_49
30.2
M2_50
30.0
M2_51
30.0
M2_52
30.0
M2_53
30.0
M2_54
29.8
M2_55
29.8
M2_56
29.7
M2_57
29.7
M2_58
29.6
M2_59
29.4
M2_60
29.3
M2_61
29.3
M2_62
29.1
M2_63
29.1
M2_64
29.0
M2_65
28.8
M2_66
28.8
M2_67
28.8
M2_68
28.8
M2_69
28.6
M2_70
28.6
M2_71
28.4
M2_72
28.4
M2_73
28.4
M2_74
28.3
M2_75
28.2
M2_76
28.1
M2_77
27.7
M2_78
27.2
M2_79
27.1
M2_80
27.1
M2_81
27.0
M2_82
27.0
M2_83
26.9
M2_84
26.8
M2_85
26.1
M2_86
25.7
M2_87
25.6
M2_88
25.4
M2_89
24.4
M2_90
23.6
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