A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.4
nTPM
Monaco:
20.7
nTPM
Schmiedel:
59.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.4
HPA sample
nTPM
Classical monocyte nTPM: 4.6
Samples: 6
Max nTPM: 7.0
Min nTPM: 3.6
P10809_1003
7.0
P10809_1020
4.2
P10809_1039
3.8
P10809_1058
3.6
P10809_1080
5.4
P10809_1107
3.8
Intermediate monocyte nTPM: 6.3
Samples: 6
Max nTPM: 10.7
Min nTPM: 3.3
P10809_1004
8.6
P10809_1023
5.6
P10809_1042
3.7
P10809_1061
10.7
P10809_1081
5.8
P10809_1108
3.3
Non-classical monocyte nTPM: 7.4
Samples: 5
Max nTPM: 10.8
Min nTPM: 5.1
P10809_1005
8.0
P10809_1053
7.3
P10809_1072
10.8
P10809_1082
5.1
P10809_1109
6.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.7
Monaco sample
nTPM
Classical monocyte nTPM: 13.5
Samples: 4
Max nTPM: 14.6
Min nTPM: 10.8
RHH5313_R3680
14.6
RHH5221_R3593
10.8
RHH5250_R3622
13.9
RHH5279_R3651
14.6
Intermediate monocyte nTPM: 20.7
Samples: 4
Max nTPM: 24.9
Min nTPM: 16.7
RHH5314_R3681
19.5
RHH5222_R3594
24.9
RHH5251_R3623
21.7
RHH5280_R3652
16.7
Non-classical monocyte nTPM: 18.0
Samples: 4
Max nTPM: 23.7
Min nTPM: 9.3
RHH5315_R3682
19.0
RHH5223_R3595
23.7
RHH5252_R3624
20.1
RHH5281_R3653
9.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.9
Schmiedel sample id
TPM
Classical monocyte TPM: 38.1
Samples: 91
Max TPM: 50.0
Min TPM: 25.5
MONOCYTES_1
50.0
MONOCYTES_2
49.1
MONOCYTES_3
48.1
MONOCYTES_4
46.5
MONOCYTES_5
45.3
MONOCYTES_6
44.5
MONOCYTES_7
44.5
MONOCYTES_8
44.3
MONOCYTES_9
44.2
MONOCYTES_10
44.0
MONOCYTES_11
43.8
MONOCYTES_12
43.7
MONOCYTES_13
43.3
MONOCYTES_14
43.3
MONOCYTES_15
43.1
MONOCYTES_16
42.9
MONOCYTES_17
42.8
MONOCYTES_18
42.7
MONOCYTES_19
42.6
MONOCYTES_20
42.5
MONOCYTES_21
42.5
MONOCYTES_22
42.4
MONOCYTES_23
42.3
MONOCYTES_24
42.2
MONOCYTES_25
41.8
MONOCYTES_26
41.4
MONOCYTES_27
41.2
MONOCYTES_28
40.9
MONOCYTES_29
40.8
MONOCYTES_30
40.7
MONOCYTES_31
40.6
MONOCYTES_32
40.5
MONOCYTES_33
40.5
MONOCYTES_34
40.4
MONOCYTES_35
40.3
MONOCYTES_36
40.3
MONOCYTES_37
40.0
MONOCYTES_38
39.5
MONOCYTES_39
39.4
MONOCYTES_40
39.2
MONOCYTES_41
39.1
MONOCYTES_42
38.8
MONOCYTES_43
38.8
MONOCYTES_44
38.5
MONOCYTES_45
38.1
MONOCYTES_46
38.1
MONOCYTES_47
37.9
MONOCYTES_48
37.7
MONOCYTES_49
37.5
MONOCYTES_50
37.4
MONOCYTES_51
37.4
MONOCYTES_52
37.3
MONOCYTES_53
37.2
MONOCYTES_54
37.0
MONOCYTES_55
37.0
MONOCYTES_56
36.6
MONOCYTES_57
36.4
MONOCYTES_58
36.4
MONOCYTES_59
36.3
MONOCYTES_60
35.8
MONOCYTES_61
35.4
MONOCYTES_62
35.4
MONOCYTES_63
35.3
MONOCYTES_64
35.3
MONOCYTES_65
35.2
MONOCYTES_66
35.1
MONOCYTES_67
35.0
MONOCYTES_68
35.0
MONOCYTES_69
34.9
MONOCYTES_70
34.9
MONOCYTES_71
34.7
MONOCYTES_72
34.5
MONOCYTES_73
34.4
MONOCYTES_74
34.4
MONOCYTES_75
34.1
MONOCYTES_76
33.9
MONOCYTES_77
33.4
MONOCYTES_78
32.7
MONOCYTES_79
32.6
MONOCYTES_80
32.5
MONOCYTES_81
32.1
MONOCYTES_82
31.9
MONOCYTES_83
31.7
MONOCYTES_84
31.5
MONOCYTES_85
30.7
MONOCYTES_86
29.9
MONOCYTES_87
29.5
MONOCYTES_88
28.6
MONOCYTES_89
26.8
MONOCYTES_90
25.9
MONOCYTES_91
25.5
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Non-classical monocyte TPM: 59.9
Samples: 90
Max TPM: 77.9
Min TPM: 46.0
M2_1
77.9
M2_2
73.5
M2_3
71.0
M2_4
70.3
M2_5
69.9
M2_6
69.9
M2_7
69.5
M2_8
67.4
M2_9
67.3
M2_10
66.0
M2_11
65.9
M2_12
65.7
M2_13
64.7
M2_14
64.5
M2_15
64.3
M2_16
64.2
M2_17
64.1
M2_18
64.0
M2_19
63.8
M2_20
63.8
M2_21
63.6
M2_22
63.5
M2_23
63.4
M2_24
63.3
M2_25
63.3
M2_26
63.2
M2_27
63.1
M2_28
63.1
M2_29
62.9
M2_30
62.9
M2_31
62.8
M2_32
62.8
M2_33
62.6
M2_34
62.5
M2_35
62.5
M2_36
62.1
M2_37
62.0
M2_38
62.0
M2_39
61.7
M2_40
61.7
M2_41
61.6
M2_42
61.5
M2_43
61.2
M2_44
60.2
M2_45
60.1
M2_46
60.0
M2_47
59.7
M2_48
59.6
M2_49
59.3
M2_50
59.1
M2_51
59.0
M2_52
59.0
M2_53
58.8
M2_54
58.6
M2_55
58.5
M2_56
58.3
M2_57
58.1
M2_58
58.0
M2_59
57.8
M2_60
57.5
M2_61
57.5
M2_62
57.3
M2_63
57.1
M2_64
56.9
M2_65
56.8
M2_66
56.5
M2_67
55.9
M2_68
55.5
M2_69
55.5
M2_70
55.4
M2_71
54.7
M2_72
54.5
M2_73
54.4
M2_74
54.3
M2_75
53.6
M2_76
53.3
M2_77
53.1
M2_78
52.8
M2_79
52.5
M2_80
52.0
M2_81
51.7
M2_82
51.6
M2_83
50.6
M2_84
50.6
M2_85
50.4
M2_86
50.3
M2_87
49.7
M2_88
49.2
M2_89
49.0
M2_90
46.0
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