A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.3
nTPM
Monaco:
29.3
nTPM
Schmiedel:
63.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.3
HPA sample
nTPM
Memory B-cell nTPM: 7.3
Samples: 6
Max nTPM: 24.3
Min nTPM: 2.0
P10809_1017
2.3
P10809_1025
3.3
P10809_1044
24.3
P10809_1063
3.6
P10809_1092
8.4
P10809_1105
2.0
Naive B-cell nTPM: 5.1
Samples: 6
Max nTPM: 7.4
Min nTPM: 1.7
P10809_1011
4.9
P10809_1029
7.4
P10809_1048
5.2
P10809_1067
4.2
P10809_1091
7.1
P10809_1104
1.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 29.3
Samples: 4
Max nTPM: 45.0
Min nTPM: 13.8
RHH5310_R3677
13.8
RHH5218_R3590
37.4
RHH5247_R3619
21.0
RHH5276_R3648
45.0
Naive B-cell nTPM: 29.3
Samples: 4
Max nTPM: 37.4
Min nTPM: 13.2
RHH5308_R3675
29.8
RHH5216_R3588
13.2
RHH5245_R3617
36.8
RHH5274_R3646
37.4
Non-switched memory B-cell nTPM: 28.0
Samples: 4
Max nTPM: 42.4
Min nTPM: 18.7
RHH5309_R3676
20.9
RHH5217_R3589
18.7
RHH5246_R3618
42.4
RHH5275_R3647
29.8
Plasmablast nTPM: 11.5
Samples: 4
Max nTPM: 12.4
Min nTPM: 10.7
RHH5312_R3679
10.8
RHH5220_R3592
12.0
RHH5249_R3621
10.7
RHH5278_R3650
12.4
Switched memory B-cell nTPM: 25.5
Samples: 4
Max nTPM: 38.1
Min nTPM: 9.8
RHH5311_R3678
9.8
RHH5219_R3591
38.1
RHH5248_R3620
21.7
RHH5277_R3649
32.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.0
Schmiedel sample id
TPM
Naive B-cell TPM: 63.0
Samples: 91
Max TPM: 114.9
Min TPM: 46.1
B_CELL_NAIVE_1
114.9
B_CELL_NAIVE_2
91.7
B_CELL_NAIVE_3
89.2
B_CELL_NAIVE_4
89.0
B_CELL_NAIVE_5
86.8
B_CELL_NAIVE_6
86.3
B_CELL_NAIVE_7
83.0
B_CELL_NAIVE_8
78.6
B_CELL_NAIVE_9
78.0
B_CELL_NAIVE_10
76.8
B_CELL_NAIVE_11
75.7
B_CELL_NAIVE_12
75.3
B_CELL_NAIVE_13
74.9
B_CELL_NAIVE_14
74.8
B_CELL_NAIVE_15
71.7
B_CELL_NAIVE_16
71.1
B_CELL_NAIVE_17
70.6
B_CELL_NAIVE_18
68.7
B_CELL_NAIVE_19
68.5
B_CELL_NAIVE_20
68.5
B_CELL_NAIVE_21
68.1
B_CELL_NAIVE_22
67.5
B_CELL_NAIVE_23
66.7
B_CELL_NAIVE_24
66.5
B_CELL_NAIVE_25
66.4
B_CELL_NAIVE_26
65.9
B_CELL_NAIVE_27
65.5
B_CELL_NAIVE_28
65.5
B_CELL_NAIVE_29
65.4
B_CELL_NAIVE_30
65.2
B_CELL_NAIVE_31
64.9
B_CELL_NAIVE_32
64.7
B_CELL_NAIVE_33
64.4
B_CELL_NAIVE_34
64.4
B_CELL_NAIVE_35
63.5
B_CELL_NAIVE_36
63.3
B_CELL_NAIVE_37
63.1
B_CELL_NAIVE_38
63.0
B_CELL_NAIVE_39
62.9
B_CELL_NAIVE_40
62.9
B_CELL_NAIVE_41
62.8
B_CELL_NAIVE_42
62.1
B_CELL_NAIVE_43
62.0
B_CELL_NAIVE_44
61.5
B_CELL_NAIVE_45
61.2
B_CELL_NAIVE_46
61.1
B_CELL_NAIVE_47
60.7
B_CELL_NAIVE_48
60.7
B_CELL_NAIVE_49
60.5
B_CELL_NAIVE_50
60.3
B_CELL_NAIVE_51
59.7
B_CELL_NAIVE_52
59.6
B_CELL_NAIVE_53
59.3
B_CELL_NAIVE_54
59.3
B_CELL_NAIVE_55
58.9
B_CELL_NAIVE_56
58.5
B_CELL_NAIVE_57
58.4
B_CELL_NAIVE_58
58.4
B_CELL_NAIVE_59
58.1
B_CELL_NAIVE_60
58.1
B_CELL_NAIVE_61
57.9
B_CELL_NAIVE_62
57.7
B_CELL_NAIVE_63
57.6
B_CELL_NAIVE_64
57.5
B_CELL_NAIVE_65
57.4
B_CELL_NAIVE_66
56.9
B_CELL_NAIVE_67
56.3
B_CELL_NAIVE_68
56.1
B_CELL_NAIVE_69
54.7
B_CELL_NAIVE_70
54.3
B_CELL_NAIVE_71
54.3
B_CELL_NAIVE_72
54.2
B_CELL_NAIVE_73
53.8
B_CELL_NAIVE_74
53.0
B_CELL_NAIVE_75
52.9
B_CELL_NAIVE_76
52.5
B_CELL_NAIVE_77
52.5
B_CELL_NAIVE_78
52.3
B_CELL_NAIVE_79
51.6
B_CELL_NAIVE_80
51.6
B_CELL_NAIVE_81
51.5
B_CELL_NAIVE_82
51.5
B_CELL_NAIVE_83
50.8
B_CELL_NAIVE_84
50.7
B_CELL_NAIVE_85
50.3
B_CELL_NAIVE_86
50.0
B_CELL_NAIVE_87
49.3
B_CELL_NAIVE_88
49.3
B_CELL_NAIVE_89
49.0
B_CELL_NAIVE_90
46.6
B_CELL_NAIVE_91
46.1
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The Human Protein Atlas project is funded
