A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.4
nTPM
Monaco:
33.8
nTPM
Schmiedel:
49.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.4
HPA sample
nTPM
Classical monocyte nTPM: 2.8
Samples: 6
Max nTPM: 5.1
Min nTPM: 1.2
P10809_1003
2.4
P10809_1020
1.2
P10809_1039
5.1
P10809_1058
2.5
P10809_1080
3.4
P10809_1107
2.3
Intermediate monocyte nTPM: 1.9
Samples: 6
Max nTPM: 3.7
Min nTPM: 0.0
P10809_1004
3.7
P10809_1023
2.1
P10809_1042
1.2
P10809_1061
0.0
P10809_1081
1.6
P10809_1108
2.7
Non-classical monocyte nTPM: 3.3
Samples: 5
Max nTPM: 6.2
Min nTPM: 0.1
P10809_1005
4.0
P10809_1053
2.0
P10809_1072
0.1
P10809_1082
6.2
P10809_1109
4.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.8
Monaco sample
nTPM
Classical monocyte nTPM: 20.6
Samples: 4
Max nTPM: 28.3
Min nTPM: 11.8
RHH5313_R3680
11.8
RHH5221_R3593
18.8
RHH5250_R3622
28.3
RHH5279_R3651
23.6
Intermediate monocyte nTPM: 26.0
Samples: 4
Max nTPM: 27.7
Min nTPM: 25.2
RHH5314_R3681
25.6
RHH5222_R3594
27.7
RHH5251_R3623
25.6
RHH5280_R3652
25.2
Non-classical monocyte nTPM: 33.8
Samples: 4
Max nTPM: 45.0
Min nTPM: 22.6
RHH5315_R3682
29.7
RHH5223_R3595
38.0
RHH5252_R3624
45.0
RHH5281_R3653
22.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.5
Schmiedel sample id
TPM
Classical monocyte TPM: 23.4
Samples: 91
Max TPM: 31.1
Min TPM: 16.4
MONOCYTES_1
31.1
MONOCYTES_2
31.0
MONOCYTES_3
31.0
MONOCYTES_4
30.9
MONOCYTES_5
29.6
MONOCYTES_6
28.9
MONOCYTES_7
28.9
MONOCYTES_8
28.3
MONOCYTES_9
28.2
MONOCYTES_10
27.8
MONOCYTES_11
27.6
MONOCYTES_12
27.2
MONOCYTES_13
27.1
MONOCYTES_14
27.1
MONOCYTES_15
27.0
MONOCYTES_16
26.8
MONOCYTES_17
26.5
MONOCYTES_18
26.3
MONOCYTES_19
26.2
MONOCYTES_20
26.1
MONOCYTES_21
25.9
MONOCYTES_22
25.8
MONOCYTES_23
25.1
MONOCYTES_24
25.1
MONOCYTES_25
24.8
MONOCYTES_26
24.5
MONOCYTES_27
24.4
MONOCYTES_28
24.4
MONOCYTES_29
24.1
MONOCYTES_30
23.9
MONOCYTES_31
23.7
MONOCYTES_32
23.7
MONOCYTES_33
23.6
MONOCYTES_34
23.5
MONOCYTES_35
23.5
MONOCYTES_36
23.5
MONOCYTES_37
23.4
MONOCYTES_38
23.4
MONOCYTES_39
23.4
MONOCYTES_40
23.4
MONOCYTES_41
23.4
MONOCYTES_42
23.3
MONOCYTES_43
23.3
MONOCYTES_44
23.2
MONOCYTES_45
23.1
MONOCYTES_46
23.1
MONOCYTES_47
23.0
MONOCYTES_48
23.0
MONOCYTES_49
23.0
MONOCYTES_50
22.9
MONOCYTES_51
22.9
MONOCYTES_52
22.8
MONOCYTES_53
22.8
MONOCYTES_54
22.8
MONOCYTES_55
22.7
MONOCYTES_56
22.6
MONOCYTES_57
22.4
MONOCYTES_58
22.4
MONOCYTES_59
22.3
MONOCYTES_60
22.1
MONOCYTES_61
22.1
MONOCYTES_62
21.8
MONOCYTES_63
21.8
MONOCYTES_64
21.6
MONOCYTES_65
21.6
MONOCYTES_66
21.5
MONOCYTES_67
21.5
MONOCYTES_68
21.4
MONOCYTES_69
21.4
MONOCYTES_70
21.4
MONOCYTES_71
21.3
MONOCYTES_72
21.3
MONOCYTES_73
20.9
MONOCYTES_74
20.9
MONOCYTES_75
20.8
MONOCYTES_76
20.8
MONOCYTES_77
20.7
MONOCYTES_78
20.6
MONOCYTES_79
20.5
MONOCYTES_80
20.4
MONOCYTES_81
20.1
MONOCYTES_82
19.7
MONOCYTES_83
19.2
MONOCYTES_84
18.9
MONOCYTES_85
18.4
MONOCYTES_86
18.4
MONOCYTES_87
17.9
MONOCYTES_88
17.2
MONOCYTES_89
17.0
MONOCYTES_90
16.8
MONOCYTES_91
16.4
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Non-classical monocyte TPM: 49.5
Samples: 90
Max TPM: 71.7
Min TPM: 31.9
M2_1
71.7
M2_2
69.6
M2_3
68.7
M2_4
68.3
M2_5
68.2
M2_6
66.0
M2_7
65.3
M2_8
62.5
M2_9
62.2
M2_10
61.8
M2_11
61.6
M2_12
61.0
M2_13
60.9
M2_14
60.1
M2_15
58.8
M2_16
57.4
M2_17
57.2
M2_18
57.0
M2_19
56.5
M2_20
56.5
M2_21
56.2
M2_22
55.8
M2_23
55.5
M2_24
55.5
M2_25
54.9
M2_26
54.9
M2_27
54.7
M2_28
54.5
M2_29
53.8
M2_30
52.3
M2_31
52.3
M2_32
52.0
M2_33
52.0
M2_34
51.7
M2_35
51.0
M2_36
50.6
M2_37
50.0
M2_38
50.0
M2_39
49.9
M2_40
49.9
M2_41
48.9
M2_42
48.8
M2_43
48.5
M2_44
48.2
M2_45
48.1
M2_46
47.7
M2_47
47.3
M2_48
47.2
M2_49
47.0
M2_50
46.7
M2_51
46.7
M2_52
46.6
M2_53
46.3
M2_54
45.8
M2_55
45.6
M2_56
45.5
M2_57
45.4
M2_58
45.4
M2_59
45.3
M2_60
45.3
M2_61
45.1
M2_62
44.9
M2_63
44.4
M2_64
44.3
M2_65
44.3
M2_66
44.1
M2_67
43.6
M2_68
43.3
M2_69
43.2
M2_70
42.5
M2_71
42.3
M2_72
42.0
M2_73
41.9
M2_74
41.9
M2_75
41.6
M2_76
41.5
M2_77
41.4
M2_78
40.0
M2_79
39.9
M2_80
38.6
M2_81
38.2
M2_82
37.8
M2_83
37.2
M2_84
36.4
M2_85
36.2
M2_86
35.9
M2_87
35.4
M2_88
33.2
M2_89
33.0
M2_90
31.9
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