A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.0
nTPM
Monaco:
101.8
nTPM
Schmiedel:
121.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.0
HPA sample
nTPM
Memory B-cell nTPM: 28.1
Samples: 6
Max nTPM: 45.6
Min nTPM: 22.5
P10809_1017
27.5
P10809_1025
26.2
P10809_1044
45.6
P10809_1063
23.3
P10809_1092
22.5
P10809_1105
23.2
Naive B-cell nTPM: 18.9
Samples: 6
Max nTPM: 20.6
Min nTPM: 16.4
P10809_1011
16.4
P10809_1029
18.4
P10809_1048
20.5
P10809_1067
17.6
P10809_1091
20.6
P10809_1104
20.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 69.8
Samples: 4
Max nTPM: 79.0
Min nTPM: 55.1
RHH5310_R3677
79.0
RHH5218_R3590
70.4
RHH5247_R3619
55.1
RHH5276_R3648
74.5
Naive B-cell nTPM: 87.6
Samples: 4
Max nTPM: 95.1
Min nTPM: 77.3
RHH5308_R3675
89.9
RHH5216_R3588
88.0
RHH5245_R3617
95.1
RHH5274_R3646
77.3
Non-switched memory B-cell nTPM: 75.1
Samples: 4
Max nTPM: 104.4
Min nTPM: 53.2
RHH5309_R3676
77.0
RHH5217_R3589
65.9
RHH5246_R3618
53.2
RHH5275_R3647
104.4
Plasmablast nTPM: 101.8
Samples: 4
Max nTPM: 115.1
Min nTPM: 85.3
RHH5312_R3679
115.1
RHH5220_R3592
92.5
RHH5249_R3621
85.3
RHH5278_R3650
114.4
Switched memory B-cell nTPM: 76.2
Samples: 4
Max nTPM: 92.2
Min nTPM: 64.9
RHH5311_R3678
68.3
RHH5219_R3591
64.9
RHH5248_R3620
79.3
RHH5277_R3649
92.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
121.9
Schmiedel sample id
TPM
Naive B-cell TPM: 121.9
Samples: 91
Max TPM: 174.1
Min TPM: 84.1
B_CELL_NAIVE_1
174.1
B_CELL_NAIVE_2
171.8
B_CELL_NAIVE_3
166.2
B_CELL_NAIVE_4
161.1
B_CELL_NAIVE_5
160.6
B_CELL_NAIVE_6
155.1
B_CELL_NAIVE_7
148.8
B_CELL_NAIVE_8
147.2
B_CELL_NAIVE_9
146.7
B_CELL_NAIVE_10
145.5
B_CELL_NAIVE_11
145.1
B_CELL_NAIVE_12
143.2
B_CELL_NAIVE_13
142.1
B_CELL_NAIVE_14
140.0
B_CELL_NAIVE_15
135.9
B_CELL_NAIVE_16
134.5
B_CELL_NAIVE_17
133.6
B_CELL_NAIVE_18
131.5
B_CELL_NAIVE_19
131.2
B_CELL_NAIVE_20
131.2
B_CELL_NAIVE_21
130.6
B_CELL_NAIVE_22
129.2
B_CELL_NAIVE_23
128.9
B_CELL_NAIVE_24
128.4
B_CELL_NAIVE_25
127.6
B_CELL_NAIVE_26
126.4
B_CELL_NAIVE_27
125.9
B_CELL_NAIVE_28
125.4
B_CELL_NAIVE_29
125.3
B_CELL_NAIVE_30
125.2
B_CELL_NAIVE_31
124.5
B_CELL_NAIVE_32
124.2
B_CELL_NAIVE_33
123.6
B_CELL_NAIVE_34
123.2
B_CELL_NAIVE_35
122.9
B_CELL_NAIVE_36
122.8
B_CELL_NAIVE_37
122.2
B_CELL_NAIVE_38
121.8
B_CELL_NAIVE_39
121.7
B_CELL_NAIVE_40
121.7
B_CELL_NAIVE_41
121.4
B_CELL_NAIVE_42
120.2
B_CELL_NAIVE_43
120.2
B_CELL_NAIVE_44
119.7
B_CELL_NAIVE_45
119.7
B_CELL_NAIVE_46
119.6
B_CELL_NAIVE_47
119.1
B_CELL_NAIVE_48
118.9
B_CELL_NAIVE_49
117.8
B_CELL_NAIVE_50
117.5
B_CELL_NAIVE_51
117.3
B_CELL_NAIVE_52
117.1
B_CELL_NAIVE_53
115.8
B_CELL_NAIVE_54
115.8
B_CELL_NAIVE_55
115.4
B_CELL_NAIVE_56
115.3
B_CELL_NAIVE_57
115.2
B_CELL_NAIVE_58
115.1
B_CELL_NAIVE_59
115.1
B_CELL_NAIVE_60
114.4
B_CELL_NAIVE_61
113.9
B_CELL_NAIVE_62
113.5
B_CELL_NAIVE_63
113.4
B_CELL_NAIVE_64
113.3
B_CELL_NAIVE_65
112.7
B_CELL_NAIVE_66
112.4
B_CELL_NAIVE_67
112.1
B_CELL_NAIVE_68
111.9
B_CELL_NAIVE_69
110.9
B_CELL_NAIVE_70
110.8
B_CELL_NAIVE_71
110.7
B_CELL_NAIVE_72
110.6
B_CELL_NAIVE_73
110.2
B_CELL_NAIVE_74
110.0
B_CELL_NAIVE_75
109.7
B_CELL_NAIVE_76
109.6
B_CELL_NAIVE_77
108.4
B_CELL_NAIVE_78
107.9
B_CELL_NAIVE_79
105.5
B_CELL_NAIVE_80
105.2
B_CELL_NAIVE_81
103.6
B_CELL_NAIVE_82
103.5
B_CELL_NAIVE_83
101.2
B_CELL_NAIVE_84
100.4
B_CELL_NAIVE_85
100.1
B_CELL_NAIVE_86
99.3
B_CELL_NAIVE_87
98.1
B_CELL_NAIVE_88
97.3
B_CELL_NAIVE_89
97.0
B_CELL_NAIVE_90
95.2
B_CELL_NAIVE_91
84.1
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