A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.9
nTPM
Monaco:
112.2
nTPM
Schmiedel:
90.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.9
HPA sample
nTPM
Classical monocyte nTPM: 17.1
Samples: 6
Max nTPM: 20.2
Min nTPM: 14.4
P10809_1003
20.2
P10809_1020
17.8
P10809_1039
19.1
P10809_1058
16.0
P10809_1080
15.1
P10809_1107
14.4
Intermediate monocyte nTPM: 17.0
Samples: 6
Max nTPM: 21.7
Min nTPM: 12.4
P10809_1004
21.7
P10809_1023
18.2
P10809_1042
12.9
P10809_1061
20.6
P10809_1081
16.1
P10809_1108
12.4
Non-classical monocyte nTPM: 19.9
Samples: 5
Max nTPM: 24.0
Min nTPM: 11.8
P10809_1005
24.0
P10809_1053
23.0
P10809_1072
20.5
P10809_1082
20.3
P10809_1109
11.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.2
Monaco sample
nTPM
Classical monocyte nTPM: 101.6
Samples: 4
Max nTPM: 119.8
Min nTPM: 88.3
RHH5313_R3680
119.8
RHH5221_R3593
94.9
RHH5250_R3622
103.3
RHH5279_R3651
88.3
Intermediate monocyte nTPM: 92.9
Samples: 4
Max nTPM: 111.1
Min nTPM: 57.6
RHH5314_R3681
100.5
RHH5222_R3594
102.5
RHH5251_R3623
57.6
RHH5280_R3652
111.1
Non-classical monocyte nTPM: 112.2
Samples: 4
Max nTPM: 129.2
Min nTPM: 93.1
RHH5315_R3682
122.7
RHH5223_R3595
129.2
RHH5252_R3624
103.9
RHH5281_R3653
93.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.6
Schmiedel sample id
TPM
Classical monocyte TPM: 62.6
Samples: 91
Max TPM: 78.2
Min TPM: 45.8
MONOCYTES_1
78.2
MONOCYTES_2
77.9
MONOCYTES_3
76.8
MONOCYTES_4
75.5
MONOCYTES_5
75.2
MONOCYTES_6
74.7
MONOCYTES_7
73.4
MONOCYTES_8
73.3
MONOCYTES_9
73.2
MONOCYTES_10
72.4
MONOCYTES_11
72.3
MONOCYTES_12
72.2
MONOCYTES_13
71.7
MONOCYTES_14
71.5
MONOCYTES_15
71.5
MONOCYTES_16
71.3
MONOCYTES_17
71.0
MONOCYTES_18
71.0
MONOCYTES_19
69.8
MONOCYTES_20
69.6
MONOCYTES_21
69.5
MONOCYTES_22
69.2
MONOCYTES_23
69.0
MONOCYTES_24
68.9
MONOCYTES_25
68.4
MONOCYTES_26
68.3
MONOCYTES_27
67.0
MONOCYTES_28
66.9
MONOCYTES_29
66.4
MONOCYTES_30
66.2
MONOCYTES_31
66.1
MONOCYTES_32
65.5
MONOCYTES_33
65.3
MONOCYTES_34
64.9
MONOCYTES_35
63.8
MONOCYTES_36
63.5
MONOCYTES_37
63.4
MONOCYTES_38
63.2
MONOCYTES_39
63.2
MONOCYTES_40
63.1
MONOCYTES_41
62.4
MONOCYTES_42
61.7
MONOCYTES_43
61.6
MONOCYTES_44
61.6
MONOCYTES_45
61.5
MONOCYTES_46
61.2
MONOCYTES_47
61.0
MONOCYTES_48
60.7
MONOCYTES_49
60.6
MONOCYTES_50
60.4
MONOCYTES_51
60.3
MONOCYTES_52
60.3
MONOCYTES_53
60.3
MONOCYTES_54
59.9
MONOCYTES_55
59.8
MONOCYTES_56
59.7
MONOCYTES_57
59.4
MONOCYTES_58
59.2
MONOCYTES_59
59.1
MONOCYTES_60
59.0
MONOCYTES_61
58.9
MONOCYTES_62
58.7
MONOCYTES_63
58.1
MONOCYTES_64
58.0
MONOCYTES_65
57.8
MONOCYTES_66
57.8
MONOCYTES_67
57.7
MONOCYTES_68
57.7
MONOCYTES_69
57.3
MONOCYTES_70
57.1
MONOCYTES_71
57.0
MONOCYTES_72
56.9
MONOCYTES_73
56.6
MONOCYTES_74
55.8
MONOCYTES_75
55.2
MONOCYTES_76
55.2
MONOCYTES_77
54.9
MONOCYTES_78
54.8
MONOCYTES_79
54.2
MONOCYTES_80
54.1
MONOCYTES_81
54.1
MONOCYTES_82
53.7
MONOCYTES_83
53.6
MONOCYTES_84
53.4
MONOCYTES_85
53.2
MONOCYTES_86
52.9
MONOCYTES_87
52.8
MONOCYTES_88
52.2
MONOCYTES_89
50.0
MONOCYTES_90
49.2
MONOCYTES_91
45.8
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Non-classical monocyte TPM: 90.6
Samples: 90
Max TPM: 133.7
Min TPM: 68.7
M2_1
133.7
M2_2
128.9
M2_3
125.0
M2_4
118.9
M2_5
118.0
M2_6
116.9
M2_7
114.5
M2_8
113.5
M2_9
112.7
M2_10
112.0
M2_11
108.7
M2_12
107.4
M2_13
106.2
M2_14
105.5
M2_15
104.2
M2_16
104.0
M2_17
103.4
M2_18
102.8
M2_19
102.8
M2_20
100.3
M2_21
100.0
M2_22
98.1
M2_23
97.6
M2_24
97.3
M2_25
97.2
M2_26
97.1
M2_27
96.3
M2_28
96.0
M2_29
95.5
M2_30
94.6
M2_31
94.4
M2_32
92.8
M2_33
91.8
M2_34
91.8
M2_35
91.4
M2_36
91.1
M2_37
90.8
M2_38
90.6
M2_39
90.3
M2_40
89.8
M2_41
89.7
M2_42
88.9
M2_43
88.3
M2_44
87.8
M2_45
87.4
M2_46
87.1
M2_47
87.0
M2_48
86.9
M2_49
86.6
M2_50
86.3
M2_51
85.9
M2_52
85.7
M2_53
85.7
M2_54
85.1
M2_55
84.8
M2_56
84.0
M2_57
83.6
M2_58
83.6
M2_59
83.4
M2_60
83.0
M2_61
83.0
M2_62
82.4
M2_63
82.4
M2_64
82.0
M2_65
81.8
M2_66
81.7
M2_67
81.6
M2_68
81.4
M2_69
81.4
M2_70
81.0
M2_71
80.7
M2_72
80.4
M2_73
80.3
M2_74
79.3
M2_75
77.8
M2_76
77.0
M2_77
76.2
M2_78
75.6
M2_79
75.2
M2_80
73.4
M2_81
73.4
M2_82
73.2
M2_83
72.5
M2_84
72.5
M2_85
71.4
M2_86
70.5
M2_87
70.5
M2_88
69.4
M2_89
69.3
M2_90
68.7
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