A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
55.7
nTPM
Monaco:
102.2
nTPM
Schmiedel:
100.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.7
HPA sample
nTPM
Memory B-cell nTPM: 49.1
Samples: 6
Max nTPM: 116.0
Min nTPM: 24.1
P10809_1017
24.1
P10809_1025
24.2
P10809_1044
116.0
P10809_1063
48.2
P10809_1092
50.6
P10809_1105
31.4
Naive B-cell nTPM: 55.7
Samples: 6
Max nTPM: 78.6
Min nTPM: 39.6
P10809_1011
40.5
P10809_1029
60.9
P10809_1048
65.9
P10809_1067
78.6
P10809_1091
48.5
P10809_1104
39.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 92.5
Samples: 4
Max nTPM: 112.9
Min nTPM: 74.7
RHH5310_R3677
74.7
RHH5218_R3590
102.1
RHH5247_R3619
112.9
RHH5276_R3648
80.2
Naive B-cell nTPM: 102.2
Samples: 4
Max nTPM: 118.6
Min nTPM: 89.9
RHH5308_R3675
103.0
RHH5216_R3588
89.9
RHH5245_R3617
118.6
RHH5274_R3646
97.1
Non-switched memory B-cell nTPM: 99.1
Samples: 4
Max nTPM: 126.5
Min nTPM: 63.8
RHH5309_R3676
63.8
RHH5217_R3589
97.1
RHH5246_R3618
109.2
RHH5275_R3647
126.5
Plasmablast nTPM: 92.7
Samples: 4
Max nTPM: 108.2
Min nTPM: 77.7
RHH5312_R3679
108.2
RHH5220_R3592
77.7
RHH5249_R3621
102.8
RHH5278_R3650
82.0
Switched memory B-cell nTPM: 100.4
Samples: 4
Max nTPM: 119.4
Min nTPM: 72.3
RHH5311_R3678
72.3
RHH5219_R3591
101.2
RHH5248_R3620
119.4
RHH5277_R3649
108.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
100.3
Schmiedel sample id
TPM
Naive B-cell TPM: 100.3
Samples: 91
Max TPM: 147.1
Min TPM: 76.5
B_CELL_NAIVE_1
147.1
B_CELL_NAIVE_2
140.3
B_CELL_NAIVE_3
137.6
B_CELL_NAIVE_4
128.5
B_CELL_NAIVE_5
124.8
B_CELL_NAIVE_6
124.6
B_CELL_NAIVE_7
122.8
B_CELL_NAIVE_8
120.0
B_CELL_NAIVE_9
119.4
B_CELL_NAIVE_10
118.5
B_CELL_NAIVE_11
113.2
B_CELL_NAIVE_12
112.8
B_CELL_NAIVE_13
112.2
B_CELL_NAIVE_14
111.4
B_CELL_NAIVE_15
111.2
B_CELL_NAIVE_16
110.4
B_CELL_NAIVE_17
110.2
B_CELL_NAIVE_18
109.8
B_CELL_NAIVE_19
109.3
B_CELL_NAIVE_20
109.2
B_CELL_NAIVE_21
108.7
B_CELL_NAIVE_22
108.1
B_CELL_NAIVE_23
107.3
B_CELL_NAIVE_24
107.2
B_CELL_NAIVE_25
106.6
B_CELL_NAIVE_26
106.4
B_CELL_NAIVE_27
105.6
B_CELL_NAIVE_28
105.5
B_CELL_NAIVE_29
105.3
B_CELL_NAIVE_30
104.2
B_CELL_NAIVE_31
104.2
B_CELL_NAIVE_32
102.9
B_CELL_NAIVE_33
102.5
B_CELL_NAIVE_34
102.4
B_CELL_NAIVE_35
101.7
B_CELL_NAIVE_36
101.7
B_CELL_NAIVE_37
101.6
B_CELL_NAIVE_38
101.5
B_CELL_NAIVE_39
100.8
B_CELL_NAIVE_40
100.1
B_CELL_NAIVE_41
99.7
B_CELL_NAIVE_42
99.5
B_CELL_NAIVE_43
98.6
B_CELL_NAIVE_44
97.8
B_CELL_NAIVE_45
97.7
B_CELL_NAIVE_46
97.2
B_CELL_NAIVE_47
96.9
B_CELL_NAIVE_48
96.9
B_CELL_NAIVE_49
96.8
B_CELL_NAIVE_50
96.8
B_CELL_NAIVE_51
96.6
B_CELL_NAIVE_52
96.6
B_CELL_NAIVE_53
96.1
B_CELL_NAIVE_54
96.0
B_CELL_NAIVE_55
95.5
B_CELL_NAIVE_56
95.1
B_CELL_NAIVE_57
94.9
B_CELL_NAIVE_58
94.6
B_CELL_NAIVE_59
94.6
B_CELL_NAIVE_60
94.2
B_CELL_NAIVE_61
94.0
B_CELL_NAIVE_62
93.8
B_CELL_NAIVE_63
93.5
B_CELL_NAIVE_64
93.1
B_CELL_NAIVE_65
93.1
B_CELL_NAIVE_66
92.4
B_CELL_NAIVE_67
92.3
B_CELL_NAIVE_68
91.7
B_CELL_NAIVE_69
91.3
B_CELL_NAIVE_70
91.1
B_CELL_NAIVE_71
90.4
B_CELL_NAIVE_72
90.0
B_CELL_NAIVE_73
89.7
B_CELL_NAIVE_74
89.6
B_CELL_NAIVE_75
88.6
B_CELL_NAIVE_76
88.3
B_CELL_NAIVE_77
88.3
B_CELL_NAIVE_78
88.2
B_CELL_NAIVE_79
87.7
B_CELL_NAIVE_80
87.3
B_CELL_NAIVE_81
87.1
B_CELL_NAIVE_82
84.8
B_CELL_NAIVE_83
84.2
B_CELL_NAIVE_84
83.5
B_CELL_NAIVE_85
83.2
B_CELL_NAIVE_86
82.8
B_CELL_NAIVE_87
82.4
B_CELL_NAIVE_88
80.2
B_CELL_NAIVE_89
79.6
B_CELL_NAIVE_90
77.0
B_CELL_NAIVE_91
76.5
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The Human Protein Atlas project is funded
