On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
16.3
nTPM
HPA Brain:
14.6
nTPM
GTEx:
16.3
nTPM
FANTOM5:
50.9
Scaled Tags Per Million
Macaque:
4.9
nTPM
Mouse:
6.9
nTPM
Rat:
13.1
nTPM
Pig:
53.9
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
17121
Sample
Intensity
Spinal cord_01
30851
Spinal cord_02
18438
Spinal cord_03
15804
Spinal cord_04
8500
Spinal cord_05
7301
Spinal cord_06
70803
Spinal cord_07
15721
Spinal cord_08
33249
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 13.3
2818
Female, age 79, both hemispheres
18.6
2819
Male, age 47, both hemispheres
13.9
2193
Male, age 75, both hemispheres
13.6
2734
Male, age 80, both hemispheres
7.3
Cervical spinal cord, central gray nTPM: 10.8
1981
Female, age 72, midline
17.4
2048
Male, age 55, midline
17.1
2565
Male, age 75, midline
8.9
2816
Male, age 47, midline
7.8
2194
Female, age 79, both hemispheres
2.9
Cervical spinal cord, dorsal horn nTPM: 9.7
2296
Male, age 66, both hemispheres
17.5
2173
Female, age 72, unknown
13.3
2069
Male, age 47, both hemispheres
9.8
2721
Male, age 90, both hemispheres
7.1
1877
Male, age 55, unknown
5.1
2297
Male, age 75, both hemispheres
5.0
Cervical spinal cord, ventral horn nTPM: 13.0
2098
Female, age 72, unknown
34.8
2809
Male, age 90, both hemispheres
21.6
2480
Male, age 75, both hemispheres
11.4
2295
Male, age 66, both hemispheres
5.8
2068
Male, age 55, unknown
2.3
2820
Female, age 79, both hemispheres
2.3
Dorsal funiculus (white matter) nTPM: 14.6
2064
Female, age 79, both hemispheres
25.6
2128
Male, age 75, both hemispheres
13.6
2817
Male, age 47, both hemispheres
13.1
2812
Male, age 66, both hemispheres
11.8
2810
Male, age 90, both hemispheres
8.6
Lateral funiculus (white matter) nTPM: 12.6
2094
Female, age 79, both hemispheres
24.4
2294
Male, age 66, both hemispheres
9.4
2099
Male, age 90, both hemispheres
8.5
2192
Male, age 75, both hemispheres
8.1
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
16.3
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 16.3
Samples: 204
Max nTPM: 88.1
Min nTPM: 1.0
Std nTPM: 15.1
Median nTPM: 10.6
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
88.1
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
79.3
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
73.1
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
72.1
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
65.0
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
64.5
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
57.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
55.6
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
52.2
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
49.6
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
49.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
47.0
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
46.1
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
43.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
42.3
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
42.2
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
38.9
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
38.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
33.9
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
33.6
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
32.6
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
32.5
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
30.6
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
29.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
29.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
28.7
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
28.1
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
28.0
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
28.0
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
27.6
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
27.6
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
26.7
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
26.3
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
25.9
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
25.8
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
25.7
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
25.5
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
25.3
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
25.1
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
25.0
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
24.7
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
24.7
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
24.6
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
24.5
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
24.5
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
24.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
24.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
24.0
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
23.9
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
23.8
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
23.4
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
23.3
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
23.2
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
22.9
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
22.2
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
21.3
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
20.1
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
19.9
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
19.6
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
18.5
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
18.2
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
18.0
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
17.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
17.7
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
17.3
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
17.3
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
16.7
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
16.3
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
15.8
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
15.7
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
15.7
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
15.6
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
15.3
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
15.0
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
15.0
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
14.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
14.8
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
14.6
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
14.6
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
14.5
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
14.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
13.9
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
13.7
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
13.5
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
13.4
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
13.1
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
13.1
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
12.8
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
12.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
12.6
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
12.3
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
12.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
11.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
11.7
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
11.4
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
11.4
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
11.3
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
11.2
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
11.2
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
10.9
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
10.7
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
10.6
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
10.6
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
10.4
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
10.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
10.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
10.3
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
10.2
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
10.1
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
10.1
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
10.0
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
9.9
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
9.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
9.7
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
9.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
9.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
9.3
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
9.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
9.0
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
8.9
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
8.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
8.6
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
8.6
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
8.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
8.3
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
8.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
8.2
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
8.0
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
7.9
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
7.9
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
7.8
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
7.8
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
7.7
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
7.7
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
7.7
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
7.7
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
7.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
7.5
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
7.4
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
7.3
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
7.3
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
7.2
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
7.1
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
6.9
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
6.8
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
6.8
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
6.8
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
6.7
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
6.7
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
6.7
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
6.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
6.4
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
6.4
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
6.4
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
6.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
6.3
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
6.2
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
6.2
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
6.0
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
6.0
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
6.0
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
5.9
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
5.7
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
5.6
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
5.6
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
5.4
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
5.4
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
5.3
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
5.3
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
5.3
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
5.1
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
5.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
5.1
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
5.0
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
5.0
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
4.9
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
4.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
4.8
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
4.7
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
4.7
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
4.3
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
4.3
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
4.2
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
4.2
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
4.1
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
4.0
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
4.0
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
3.9
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
3.9
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
3.8
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
3.7
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
3.7
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
3.7
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
3.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
3.4
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
3.3
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
3.3
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
3.2
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
3.0
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
2.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
2.6
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
2.4
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1.7
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
1.0
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.9
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 2.7
Samples: 2
Max nTPM: 3.3
Min nTPM: 2.1
Sample A
2.1
Sample B
3.3
Ventral spinal cord nTPM: 4.9
Samples: 1
Max nTPM: 4.9
Min nTPM: 4.9
Sample A
4.9
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
53.9
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 46.8
Samples: 4
Max nTPM: 62.6
Min nTPM: 38.8
Sample A
Female
42.7
Sample B
Female
62.6
Sample C
Male
43.1
Sample D
Male
38.8
Ventral spinal cord nTPM: 53.9
Samples: 4
Max nTPM: 66.4
Min nTPM: 37.4
Sample A
Female
53.3
Sample B
Female
58.3
Sample C
Male
37.4
Sample D
Male
66.4
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.9
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 6.9
Samples: 4
Max nTPM: 8.7
Min nTPM: 4.1
Sample A
8.7
Sample B
7.1
Sample C
7.6
Sample D
4.1
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.1
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 13.0
Samples: 4
Max nTPM: 17.8
Min nTPM: 9.3
Sample A
12.6
Sample A
12.4
Sample A
9.3
Sample A
17.8
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The Human Protein Atlas project is funded
