MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.3 nTPM
HPA Brain:42.6 nTPM
GTEx:35.3 nTPM
FANTOM5:19.3 Scaled Tags Per Million
Pig:40.0 nTPM
Mouse:38.3 nTPM
Allen mouse:3.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.1
1827 Male, age 72, unknown 43.8
2666 Male, age 74, left hemisphere 40.4
2586 Male, age 75, left hemisphere 40.1
2411 Female, age 72, unknown 38.6
1870 Female, age 42, unknown 36.1
2019 Male, age 18, unknown 34.7
1833 Male, age 53, unknown 34.0
2219 Male, age 76, both hemispheres 33.8
2828 Female, age 72, unknown 31.2
1830 Male, age 51, unknown 28.6
Dorsal raphe nucleus
nTPM: 32.8
2298 Female, age 72, unknown 38.9
1828 Male, age 53, unknown 36.9
2750 Male, age 76, both hemispheres 30.9
2016 Female, age 72, unknown 28.7
2047 Male, age 72, unknown 28.7
Inferior colliculus
nTPM: 33.8
2849 Male, age 72, unknown 36.3
2097 Female, age 72, unknown 35.0
1848 Female, age 42, unknown 32.3
1890 Male, age 53, unknown 31.8
Median raphe nucleus
nTPM: 38.2
2220 Male, age 76, midline 38.2
Periaquaductal grey, anterior
nTPM: 36.4
1795 Male, age 51, unknown 40.6
2502 Female, age 75, unknown 36.3
1947 Male, age 18, unknown 32.4
Periaquaductal grey, dorsal
nTPM: 35.1
1840 Male, age 53, unknown 38.1
1831 Male, age 72, unknown 34.8
2464 Female, age 72, unknown 33.9
2850 Male, age 76, both hemispheres 33.6
Periaquaductal grey, lateral
nTPM: 31.8
2053 Male, age 18, unknown 35.6
2140 Male, age 76, both hemispheres 34.2
2272 Male, age 74, both hemispheres 25.5
Pretectal area
nTPM: 40.5
1816 Male, age 51, unknown 57.7
1944 Female, age 72, unknown 52.5
1815 Male, age 53, unknown 50.8
2007 Male, age 72, unknown 50.1
1817 Female, age 42, unknown 45.5
2224 Female, age 72, unknown 37.8
2825 Male, age 18, unknown 32.5
2316 Male, age 76, right hemisphere 31.7
2407 Male, age 75, both hemispheres 29.9
2667 Female, age 75, unknown 28.8
2273 Male, age 74, both hemispheres 28.6
Red nucleus
nTPM: 28.6
2725 Female, age 75, unknown 41.9
2785 Male, age 18, unknown 34.6
2584 Male, age 75, left hemisphere 34.0
2588 Male, age 74, left hemisphere 30.2
2503 Female, age 72, unknown 29.7
1821 Female, age 72, unknown 27.0
2823 Male, age 76, right hemisphere 26.5
1904 Male, age 53, unknown 26.4
2769 Male, age 72, unknown 25.0
2227 Male, age 72, unknown 24.7
1954 Female, age 42, unknown 22.7
1865 Male, age 51, unknown 20.1
Substantia nigra
nTPM: 42.6
1916 Female, age 42, unknown 59.6
1889 Female, age 72, unknown 48.7
1851 Male, age 51, unknown 46.6
2241 Male, age 72, unknown 45.1
2665 Male, age 74, both hemispheres 44.6
2409 Female, age 72, unknown 39.6
2583 Male, age 75, right hemisphere 37.8
2699 Male, age 18, unknown 35.3
2590 Female, age 75, unknown 35.1
1941 Male, age 53, unknown 33.6
Superior colliculus
nTPM: 35.8
1796 Male, age 53, unknown 43.8
2087 Female, age 72, unknown 43.3
2261 Male, age 18, unknown 42.0
2668 Female, age 75, unknown 38.4
1895 Male, age 76, right hemisphere 37.4
2587 Male, age 74, left hemisphere 35.3
1839 Male, age 51, unknown 32.5
1913 Female, age 42, unknown 29.5
1995 Male, age 72, unknown 28.4
2664 Male, age 75, both hemispheres 27.6
Ventral tegmental area
nTPM: 40.3
2218 Male, age 76, both hemispheres 48.6
1915 Female, age 42, unknown 47.7
2410 Female, age 72, unknown 43.1
1942 Male, age 51, unknown 40.9
2223 Female, age 72, unknown 31.6
2021 Male, age 53, unknown 29.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.3
Samples: 183

Max nTPM: 102.5
Min nTPM: 15.0
Std nTPM: 14.7
Median nTPM: 31.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 102.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 91.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 88.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 88.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 82.0
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 71.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 67.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 64.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 62.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 61.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 61.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 19.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.3
FF:10158-103A5 76 years, female 19.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 40.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.4
Samples: 4

Max nTPM: 48.9
Min nTPM: 29.2
Sample A Female 48.9
Sample B Female 35.1
Sample C Male 36.5
Sample D Male 29.2
Midbrain
nTPM: 38.3
Samples: 4

Max nTPM: 44.6
Min nTPM: 29.4
Sample A Female 29.4
Sample B Female 43.8
Sample C Male 44.6
Sample D Male 35.2
Periaqueductal gray
nTPM: 40.0
Samples: 3

Max nTPM: 45.8
Min nTPM: 32.5
Sample B Female 41.6
Sample C Male 45.8
Sample D Male 32.5
Superior colliculi
nTPM: 38.8
Samples: 4

Max nTPM: 48.7
Min nTPM: 25.4
Sample A Female 48.7
Sample B Female 25.4
Sample C Male 38.3
Sample D Male 42.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.3
Samples: 4

Max nTPM: 43.8
Min nTPM: 31.6
Sample A Male 43.8
Sample B Male 35.4
Sample C Female 31.6
Sample D Female 42.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
75651202 Antisense, RP_060518_01_C10, Mouse strain C57BL/6J (56 days, male) 4.3
79588292 Antisense, RP_071204_02_E03, Mouse strain C57BL/6J (56 days, male) 4.3
68666481 Antisense, RP_050126_02_D02, Mouse strain C57BL/6J (56 days, male) 3.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo