A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.7
nTPM
Monaco:
10.6
nTPM
Schmiedel:
63.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.7
HPA sample
nTPM
Memory B-cell nTPM: 1.7
Samples: 6
Max nTPM: 4.6
Min nTPM: 0.3
P10809_1017
0.3
P10809_1025
1.4
P10809_1044
4.6
P10809_1063
0.8
P10809_1092
1.7
P10809_1105
1.4
Naive B-cell nTPM: 3.8
Samples: 6
Max nTPM: 6.6
Min nTPM: 0.0
P10809_1011
1.7
P10809_1029
3.9
P10809_1048
0.0
P10809_1067
5.2
P10809_1091
6.6
P10809_1104
5.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 3.6
Samples: 4
Max nTPM: 5.6
Min nTPM: 1.1
RHH5310_R3677
3.0
RHH5218_R3590
1.1
RHH5247_R3619
5.6
RHH5276_R3648
4.8
Naive B-cell nTPM: 10.6
Samples: 4
Max nTPM: 11.9
Min nTPM: 8.6
RHH5308_R3675
10.8
RHH5216_R3588
8.6
RHH5245_R3617
11.9
RHH5274_R3646
11.0
Non-switched memory B-cell nTPM: 8.0
Samples: 4
Max nTPM: 15.6
Min nTPM: 2.6
RHH5309_R3676
5.9
RHH5217_R3589
15.6
RHH5246_R3618
7.7
RHH5275_R3647
2.6
Plasmablast nTPM: 0.4
Samples: 4
Max nTPM: 1.4
Min nTPM: 0.0
RHH5312_R3679
0.0
RHH5220_R3592
0.0
RHH5249_R3621
1.4
RHH5278_R3650
0.0
Switched memory B-cell nTPM: 3.0
Samples: 4
Max nTPM: 3.4
Min nTPM: 2.2
RHH5311_R3678
3.0
RHH5219_R3591
2.2
RHH5248_R3620
3.4
RHH5277_R3649
3.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.1
Schmiedel sample id
TPM
Naive B-cell TPM: 63.1
Samples: 91
Max TPM: 113.5
Min TPM: 32.8
B_CELL_NAIVE_1
113.5
B_CELL_NAIVE_2
104.5
B_CELL_NAIVE_3
88.2
B_CELL_NAIVE_4
87.7
B_CELL_NAIVE_5
87.1
B_CELL_NAIVE_6
86.0
B_CELL_NAIVE_7
84.1
B_CELL_NAIVE_8
82.6
B_CELL_NAIVE_9
80.8
B_CELL_NAIVE_10
79.2
B_CELL_NAIVE_11
77.9
B_CELL_NAIVE_12
77.2
B_CELL_NAIVE_13
76.6
B_CELL_NAIVE_14
76.3
B_CELL_NAIVE_15
75.3
B_CELL_NAIVE_16
75.1
B_CELL_NAIVE_17
74.7
B_CELL_NAIVE_18
72.6
B_CELL_NAIVE_19
72.6
B_CELL_NAIVE_20
72.4
B_CELL_NAIVE_21
72.3
B_CELL_NAIVE_22
71.9
B_CELL_NAIVE_23
71.2
B_CELL_NAIVE_24
69.9
B_CELL_NAIVE_25
69.2
B_CELL_NAIVE_26
69.0
B_CELL_NAIVE_27
68.8
B_CELL_NAIVE_28
68.3
B_CELL_NAIVE_29
68.1
B_CELL_NAIVE_30
67.9
B_CELL_NAIVE_31
67.5
B_CELL_NAIVE_32
67.4
B_CELL_NAIVE_33
67.3
B_CELL_NAIVE_34
64.8
B_CELL_NAIVE_35
64.8
B_CELL_NAIVE_36
64.5
B_CELL_NAIVE_37
63.8
B_CELL_NAIVE_38
63.6
B_CELL_NAIVE_39
63.4
B_CELL_NAIVE_40
63.3
B_CELL_NAIVE_41
62.6
B_CELL_NAIVE_42
62.4
B_CELL_NAIVE_43
62.2
B_CELL_NAIVE_44
62.0
B_CELL_NAIVE_45
61.6
B_CELL_NAIVE_46
61.6
B_CELL_NAIVE_47
61.4
B_CELL_NAIVE_48
61.4
B_CELL_NAIVE_49
61.1
B_CELL_NAIVE_50
60.9
B_CELL_NAIVE_51
60.7
B_CELL_NAIVE_52
60.2
B_CELL_NAIVE_53
60.1
B_CELL_NAIVE_54
60.0
B_CELL_NAIVE_55
59.8
B_CELL_NAIVE_56
59.8
B_CELL_NAIVE_57
59.4
B_CELL_NAIVE_58
59.3
B_CELL_NAIVE_59
59.0
B_CELL_NAIVE_60
58.9
B_CELL_NAIVE_61
58.3
B_CELL_NAIVE_62
55.7
B_CELL_NAIVE_63
55.6
B_CELL_NAIVE_64
55.5
B_CELL_NAIVE_65
55.1
B_CELL_NAIVE_66
54.7
B_CELL_NAIVE_67
54.1
B_CELL_NAIVE_68
54.0
B_CELL_NAIVE_69
53.9
B_CELL_NAIVE_70
53.7
B_CELL_NAIVE_71
53.5
B_CELL_NAIVE_72
52.5
B_CELL_NAIVE_73
52.2
B_CELL_NAIVE_74
52.0
B_CELL_NAIVE_75
51.5
B_CELL_NAIVE_76
51.1
B_CELL_NAIVE_77
51.0
B_CELL_NAIVE_78
50.5
B_CELL_NAIVE_79
48.2
B_CELL_NAIVE_80
47.5
B_CELL_NAIVE_81
47.2
B_CELL_NAIVE_82
47.1
B_CELL_NAIVE_83
46.9
B_CELL_NAIVE_84
46.3
B_CELL_NAIVE_85
45.4
B_CELL_NAIVE_86
45.0
B_CELL_NAIVE_87
43.5
B_CELL_NAIVE_88
42.0
B_CELL_NAIVE_89
41.8
B_CELL_NAIVE_90
39.9
B_CELL_NAIVE_91
32.8
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