A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.3
nTPM
Monaco:
24.5
nTPM
Schmiedel:
32.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.3
HPA sample
nTPM
Classical monocyte nTPM: 1.2
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.9
P10809_1003
1.3
P10809_1020
1.3
P10809_1039
0.9
P10809_1058
1.0
P10809_1080
1.7
P10809_1107
1.2
Intermediate monocyte nTPM: 3.5
Samples: 6
Max nTPM: 6.1
Min nTPM: 0.7
P10809_1004
5.5
P10809_1023
1.8
P10809_1042
2.5
P10809_1061
0.7
P10809_1081
4.6
P10809_1108
6.1
Non-classical monocyte nTPM: 4.3
Samples: 5
Max nTPM: 8.5
Min nTPM: 1.5
P10809_1005
2.4
P10809_1053
1.5
P10809_1072
8.5
P10809_1082
4.2
P10809_1109
4.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.5
Monaco sample
nTPM
Classical monocyte nTPM: 14.1
Samples: 4
Max nTPM: 22.5
Min nTPM: 9.8
RHH5313_R3680
13.1
RHH5221_R3593
22.5
RHH5250_R3622
10.8
RHH5279_R3651
9.8
Intermediate monocyte nTPM: 24.5
Samples: 4
Max nTPM: 45.8
Min nTPM: 12.0
RHH5314_R3681
12.0
RHH5222_R3594
45.8
RHH5251_R3623
22.6
RHH5280_R3652
17.5
Non-classical monocyte nTPM: 21.5
Samples: 4
Max nTPM: 44.2
Min nTPM: 9.0
RHH5315_R3682
15.2
RHH5223_R3595
44.2
RHH5252_R3624
17.4
RHH5281_R3653
9.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.1
Schmiedel sample id
TPM
Classical monocyte TPM: 22.0
Samples: 91
Max TPM: 55.1
Min TPM: 9.9
MONOCYTES_1
55.1
MONOCYTES_2
53.4
MONOCYTES_3
42.7
MONOCYTES_4
37.6
MONOCYTES_5
35.0
MONOCYTES_6
34.1
MONOCYTES_7
33.5
MONOCYTES_8
31.7
MONOCYTES_9
31.4
MONOCYTES_10
30.9
MONOCYTES_11
29.7
MONOCYTES_12
28.1
MONOCYTES_13
27.1
MONOCYTES_14
27.0
MONOCYTES_15
27.0
MONOCYTES_16
26.8
MONOCYTES_17
26.6
MONOCYTES_18
26.6
MONOCYTES_19
26.4
MONOCYTES_20
26.3
MONOCYTES_21
26.3
MONOCYTES_22
25.8
MONOCYTES_23
25.4
MONOCYTES_24
25.4
MONOCYTES_25
25.2
MONOCYTES_26
25.1
MONOCYTES_27
24.9
MONOCYTES_28
24.7
MONOCYTES_29
24.6
MONOCYTES_30
24.5
MONOCYTES_31
24.4
MONOCYTES_32
23.9
MONOCYTES_33
23.4
MONOCYTES_34
23.4
MONOCYTES_35
22.4
MONOCYTES_36
22.2
MONOCYTES_37
22.2
MONOCYTES_38
22.1
MONOCYTES_39
21.7
MONOCYTES_40
21.4
MONOCYTES_41
21.2
MONOCYTES_42
20.9
MONOCYTES_43
20.7
MONOCYTES_44
20.5
MONOCYTES_45
20.4
MONOCYTES_46
20.3
MONOCYTES_47
20.3
MONOCYTES_48
20.2
MONOCYTES_49
20.0
MONOCYTES_50
19.9
MONOCYTES_51
19.6
MONOCYTES_52
19.4
MONOCYTES_53
19.4
MONOCYTES_54
19.0
MONOCYTES_55
18.9
MONOCYTES_56
18.5
MONOCYTES_57
18.5
MONOCYTES_58
18.5
MONOCYTES_59
18.4
MONOCYTES_60
18.4
MONOCYTES_61
18.3
MONOCYTES_62
18.2
MONOCYTES_63
18.0
MONOCYTES_64
17.9
MONOCYTES_65
17.7
MONOCYTES_66
17.6
MONOCYTES_67
17.6
MONOCYTES_68
17.1
MONOCYTES_69
16.6
MONOCYTES_70
16.4
MONOCYTES_71
16.2
MONOCYTES_72
16.0
MONOCYTES_73
16.0
MONOCYTES_74
15.9
MONOCYTES_75
15.9
MONOCYTES_76
15.7
MONOCYTES_77
15.6
MONOCYTES_78
15.4
MONOCYTES_79
15.1
MONOCYTES_80
15.1
MONOCYTES_81
14.9
MONOCYTES_82
14.8
MONOCYTES_83
14.6
MONOCYTES_84
14.4
MONOCYTES_85
14.0
MONOCYTES_86
13.7
MONOCYTES_87
13.4
MONOCYTES_88
11.6
MONOCYTES_89
10.6
MONOCYTES_90
10.3
MONOCYTES_91
9.9
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Non-classical monocyte TPM: 32.1
Samples: 90
Max TPM: 72.1
Min TPM: 14.4
M2_1
72.1
M2_2
62.3
M2_3
57.5
M2_4
56.6
M2_5
56.6
M2_6
54.7
M2_7
52.1
M2_8
51.5
M2_9
49.1
M2_10
48.1
M2_11
47.6
M2_12
46.0
M2_13
45.4
M2_14
44.4
M2_15
43.6
M2_16
42.8
M2_17
42.7
M2_18
42.5
M2_19
41.0
M2_20
40.8
M2_21
38.5
M2_22
38.4
M2_23
38.0
M2_24
37.4
M2_25
37.4
M2_26
34.8
M2_27
34.7
M2_28
34.7
M2_29
34.4
M2_30
33.6
M2_31
33.4
M2_32
33.3
M2_33
33.3
M2_34
33.1
M2_35
32.7
M2_36
32.4
M2_37
31.9
M2_38
31.3
M2_39
31.1
M2_40
31.1
M2_41
30.4
M2_42
29.9
M2_43
29.8
M2_44
29.5
M2_45
29.0
M2_46
28.9
M2_47
28.5
M2_48
28.5
M2_49
28.3
M2_50
28.3
M2_51
27.8
M2_52
27.4
M2_53
27.1
M2_54
26.9
M2_55
26.9
M2_56
26.8
M2_57
26.5
M2_58
26.4
M2_59
26.3
M2_60
26.3
M2_61
25.8
M2_62
25.7
M2_63
25.7
M2_64
24.9
M2_65
24.8
M2_66
24.7
M2_67
24.0
M2_68
23.9
M2_69
23.8
M2_70
23.7
M2_71
23.5
M2_72
23.3
M2_73
23.0
M2_74
22.9
M2_75
22.5
M2_76
22.0
M2_77
21.8
M2_78
21.1
M2_79
20.4
M2_80
20.2
M2_81
20.1
M2_82
19.8
M2_83
19.5
M2_84
19.5
M2_85
18.5
M2_86
16.6
M2_87
16.1
M2_88
15.6
M2_89
15.3
M2_90
14.4
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