A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.0
nTPM
Monaco:
28.1
nTPM
Schmiedel:
122.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.0
HPA sample
nTPM
Memory B-cell nTPM: 2.0
Samples: 6
Max nTPM: 2.9
Min nTPM: 0.4
P10809_1017
2.3
P10809_1025
0.4
P10809_1044
2.0
P10809_1063
2.5
P10809_1092
2.1
P10809_1105
2.9
Naive B-cell nTPM: 5.1
Samples: 6
Max nTPM: 7.4
Min nTPM: 0.0
P10809_1011
6.1
P10809_1029
7.4
P10809_1048
0.0
P10809_1067
4.3
P10809_1091
5.6
P10809_1104
7.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 14.0
Samples: 4
Max nTPM: 15.5
Min nTPM: 13.1
RHH5310_R3677
13.1
RHH5218_R3590
15.5
RHH5247_R3619
13.1
RHH5276_R3648
14.2
Naive B-cell nTPM: 28.1
Samples: 4
Max nTPM: 32.2
Min nTPM: 25.6
RHH5308_R3675
25.6
RHH5216_R3588
26.7
RHH5245_R3617
32.2
RHH5274_R3646
27.9
Non-switched memory B-cell nTPM: 13.5
Samples: 4
Max nTPM: 16.2
Min nTPM: 9.1
RHH5309_R3676
9.1
RHH5217_R3589
15.7
RHH5246_R3618
16.2
RHH5275_R3647
13.0
Plasmablast nTPM: 15.5
Samples: 4
Max nTPM: 18.2
Min nTPM: 11.3
RHH5312_R3679
16.1
RHH5220_R3592
16.2
RHH5249_R3621
18.2
RHH5278_R3650
11.3
Switched memory B-cell nTPM: 11.6
Samples: 4
Max nTPM: 13.6
Min nTPM: 10.2
RHH5311_R3678
12.0
RHH5219_R3591
10.7
RHH5248_R3620
13.6
RHH5277_R3649
10.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.5
Schmiedel sample id
TPM
Naive B-cell TPM: 122.5
Samples: 91
Max TPM: 174.1
Min TPM: 84.4
B_CELL_NAIVE_1
174.1
B_CELL_NAIVE_2
172.9
B_CELL_NAIVE_3
168.3
B_CELL_NAIVE_4
162.5
B_CELL_NAIVE_5
155.1
B_CELL_NAIVE_6
154.7
B_CELL_NAIVE_7
153.0
B_CELL_NAIVE_8
148.5
B_CELL_NAIVE_9
147.6
B_CELL_NAIVE_10
146.2
B_CELL_NAIVE_11
146.1
B_CELL_NAIVE_12
145.4
B_CELL_NAIVE_13
143.8
B_CELL_NAIVE_14
142.5
B_CELL_NAIVE_15
141.2
B_CELL_NAIVE_16
140.8
B_CELL_NAIVE_17
138.8
B_CELL_NAIVE_18
138.7
B_CELL_NAIVE_19
138.4
B_CELL_NAIVE_20
137.2
B_CELL_NAIVE_21
136.7
B_CELL_NAIVE_22
135.1
B_CELL_NAIVE_23
134.3
B_CELL_NAIVE_24
133.2
B_CELL_NAIVE_25
133.1
B_CELL_NAIVE_26
132.9
B_CELL_NAIVE_27
131.7
B_CELL_NAIVE_28
131.2
B_CELL_NAIVE_29
129.8
B_CELL_NAIVE_30
128.6
B_CELL_NAIVE_31
127.8
B_CELL_NAIVE_32
127.3
B_CELL_NAIVE_33
126.5
B_CELL_NAIVE_34
126.3
B_CELL_NAIVE_35
125.5
B_CELL_NAIVE_36
125.5
B_CELL_NAIVE_37
125.4
B_CELL_NAIVE_38
125.3
B_CELL_NAIVE_39
125.1
B_CELL_NAIVE_40
125.1
B_CELL_NAIVE_41
124.8
B_CELL_NAIVE_42
124.5
B_CELL_NAIVE_43
123.9
B_CELL_NAIVE_44
122.6
B_CELL_NAIVE_45
122.2
B_CELL_NAIVE_46
122.0
B_CELL_NAIVE_47
120.4
B_CELL_NAIVE_48
120.2
B_CELL_NAIVE_49
118.9
B_CELL_NAIVE_50
118.8
B_CELL_NAIVE_51
117.8
B_CELL_NAIVE_52
117.7
B_CELL_NAIVE_53
117.5
B_CELL_NAIVE_54
117.4
B_CELL_NAIVE_55
116.7
B_CELL_NAIVE_56
116.5
B_CELL_NAIVE_57
115.3
B_CELL_NAIVE_58
115.2
B_CELL_NAIVE_59
115.1
B_CELL_NAIVE_60
114.1
B_CELL_NAIVE_61
113.4
B_CELL_NAIVE_62
112.9
B_CELL_NAIVE_63
112.8
B_CELL_NAIVE_64
112.6
B_CELL_NAIVE_65
112.5
B_CELL_NAIVE_66
111.8
B_CELL_NAIVE_67
111.5
B_CELL_NAIVE_68
110.5
B_CELL_NAIVE_69
110.2
B_CELL_NAIVE_70
109.9
B_CELL_NAIVE_71
109.3
B_CELL_NAIVE_72
108.5
B_CELL_NAIVE_73
106.4
B_CELL_NAIVE_74
105.5
B_CELL_NAIVE_75
105.4
B_CELL_NAIVE_76
104.6
B_CELL_NAIVE_77
104.1
B_CELL_NAIVE_78
102.4
B_CELL_NAIVE_79
101.6
B_CELL_NAIVE_80
99.1
B_CELL_NAIVE_81
97.5
B_CELL_NAIVE_82
97.1
B_CELL_NAIVE_83
95.9
B_CELL_NAIVE_84
95.5
B_CELL_NAIVE_85
94.7
B_CELL_NAIVE_86
93.1
B_CELL_NAIVE_87
93.1
B_CELL_NAIVE_88
90.3
B_CELL_NAIVE_89
90.3
B_CELL_NAIVE_90
89.7
B_CELL_NAIVE_91
84.4
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The Human Protein Atlas project is funded
