A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
7.0
nTPM
Schmiedel:
22.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.2
Min nTPM: 0.6
P10809_1003
0.9
P10809_1020
0.6
P10809_1039
0.7
P10809_1058
0.9
P10809_1080
1.2
P10809_1107
0.9
Intermediate monocyte nTPM: 0.7
Samples: 6
Max nTPM: 1.5
Min nTPM: 0.0
P10809_1004
0.8
P10809_1023
1.2
P10809_1042
0.1
P10809_1061
0.0
P10809_1081
0.8
P10809_1108
1.5
Non-classical monocyte nTPM: 0.7
Samples: 5
Max nTPM: 1.1
Min nTPM: 0.0
P10809_1005
0.5
P10809_1053
1.0
P10809_1072
0.0
P10809_1082
0.9
P10809_1109
1.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.0
Monaco sample
nTPM
Classical monocyte nTPM: 5.3
Samples: 4
Max nTPM: 6.1
Min nTPM: 4.5
RHH5313_R3680
4.5
RHH5221_R3593
6.1
RHH5250_R3622
5.9
RHH5279_R3651
4.5
Intermediate monocyte nTPM: 7.0
Samples: 4
Max nTPM: 8.6
Min nTPM: 4.5
RHH5314_R3681
4.5
RHH5222_R3594
8.4
RHH5251_R3623
8.6
RHH5280_R3652
6.4
Non-classical monocyte nTPM: 4.8
Samples: 4
Max nTPM: 6.0
Min nTPM: 2.5
RHH5315_R3682
6.0
RHH5223_R3595
5.2
RHH5252_R3624
5.3
RHH5281_R3653
2.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.8
Schmiedel sample id
TPM
Classical monocyte TPM: 22.8
Samples: 91
Max TPM: 32.5
Min TPM: 15.0
MONOCYTES_1
32.5
MONOCYTES_2
32.4
MONOCYTES_3
29.6
MONOCYTES_4
29.1
MONOCYTES_5
28.8
MONOCYTES_6
28.5
MONOCYTES_7
28.3
MONOCYTES_8
27.8
MONOCYTES_9
27.8
MONOCYTES_10
27.4
MONOCYTES_11
27.0
MONOCYTES_12
26.7
MONOCYTES_13
26.7
MONOCYTES_14
26.0
MONOCYTES_15
25.6
MONOCYTES_16
25.5
MONOCYTES_17
25.3
MONOCYTES_18
25.3
MONOCYTES_19
25.1
MONOCYTES_20
25.0
MONOCYTES_21
25.0
MONOCYTES_22
24.9
MONOCYTES_23
24.8
MONOCYTES_24
24.7
MONOCYTES_25
24.6
MONOCYTES_26
24.5
MONOCYTES_27
24.4
MONOCYTES_28
24.3
MONOCYTES_29
24.3
MONOCYTES_30
24.3
MONOCYTES_31
24.2
MONOCYTES_32
23.7
MONOCYTES_33
23.7
MONOCYTES_34
23.5
MONOCYTES_35
23.5
MONOCYTES_36
23.4
MONOCYTES_37
23.4
MONOCYTES_38
23.3
MONOCYTES_39
23.2
MONOCYTES_40
23.1
MONOCYTES_41
23.0
MONOCYTES_42
23.0
MONOCYTES_43
22.9
MONOCYTES_44
22.8
MONOCYTES_45
22.8
MONOCYTES_46
22.7
MONOCYTES_47
22.4
MONOCYTES_48
22.3
MONOCYTES_49
22.3
MONOCYTES_50
22.2
MONOCYTES_51
22.1
MONOCYTES_52
22.0
MONOCYTES_53
22.0
MONOCYTES_54
22.0
MONOCYTES_55
21.9
MONOCYTES_56
21.9
MONOCYTES_57
21.9
MONOCYTES_58
21.7
MONOCYTES_59
21.7
MONOCYTES_60
21.5
MONOCYTES_61
21.4
MONOCYTES_62
21.4
MONOCYTES_63
20.8
MONOCYTES_64
20.7
MONOCYTES_65
20.5
MONOCYTES_66
20.5
MONOCYTES_67
20.4
MONOCYTES_68
20.3
MONOCYTES_69
20.2
MONOCYTES_70
20.1
MONOCYTES_71
20.0
MONOCYTES_72
19.9
MONOCYTES_73
19.6
MONOCYTES_74
19.5
MONOCYTES_75
19.2
MONOCYTES_76
19.0
MONOCYTES_77
19.0
MONOCYTES_78
19.0
MONOCYTES_79
18.9
MONOCYTES_80
18.9
MONOCYTES_81
18.8
MONOCYTES_82
18.8
MONOCYTES_83
18.8
MONOCYTES_84
18.7
MONOCYTES_85
18.5
MONOCYTES_86
18.5
MONOCYTES_87
18.2
MONOCYTES_88
18.0
MONOCYTES_89
17.2
MONOCYTES_90
16.0
MONOCYTES_91
15.0
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Non-classical monocyte TPM: 21.5
Samples: 90
Max TPM: 31.8
Min TPM: 11.5
M2_1
31.8
M2_2
31.0
M2_3
30.2
M2_4
28.6
M2_5
27.8
M2_6
27.5
M2_7
27.4
M2_8
27.0
M2_9
26.9
M2_10
26.9
M2_11
26.8
M2_12
26.5
M2_13
26.4
M2_14
26.1
M2_15
26.1
M2_16
25.9
M2_17
25.6
M2_18
25.4
M2_19
25.1
M2_20
24.8
M2_21
24.5
M2_22
24.4
M2_23
24.4
M2_24
24.2
M2_25
24.0
M2_26
23.6
M2_27
23.6
M2_28
23.3
M2_29
23.2
M2_30
23.2
M2_31
23.1
M2_32
23.0
M2_33
22.9
M2_34
22.7
M2_35
22.7
M2_36
22.6
M2_37
22.4
M2_38
22.0
M2_39
21.6
M2_40
21.6
M2_41
21.6
M2_42
21.4
M2_43
21.4
M2_44
21.4
M2_45
21.3
M2_46
21.2
M2_47
21.2
M2_48
21.1
M2_49
21.0
M2_50
20.8
M2_51
20.5
M2_52
20.5
M2_53
20.4
M2_54
20.3
M2_55
20.2
M2_56
20.1
M2_57
20.0
M2_58
20.0
M2_59
19.9
M2_60
19.9
M2_61
19.7
M2_62
19.6
M2_63
19.5
M2_64
19.3
M2_65
19.3
M2_66
19.3
M2_67
19.2
M2_68
19.1
M2_69
18.9
M2_70
18.5
M2_71
18.4
M2_72
18.1
M2_73
18.1
M2_74
18.0
M2_75
17.8
M2_76
17.7
M2_77
17.1
M2_78
17.1
M2_79
16.4
M2_80
16.3
M2_81
15.8
M2_82
15.8
M2_83
15.8
M2_84
15.6
M2_85
15.0
M2_86
14.7
M2_87
14.7
M2_88
13.7
M2_89
12.8
M2_90
11.5
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