A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.4
nTPM
Monaco:
88.0
nTPM
Schmiedel:
109.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.4
HPA sample
nTPM
Memory B-cell nTPM: 14.4
Samples: 6
Max nTPM: 22.3
Min nTPM: 10.2
P10809_1017
22.3
P10809_1025
15.4
P10809_1044
10.2
P10809_1063
10.7
P10809_1092
15.6
P10809_1105
12.3
Naive B-cell nTPM: 12.0
Samples: 6
Max nTPM: 15.6
Min nTPM: 9.5
P10809_1011
14.1
P10809_1029
9.9
P10809_1048
13.3
P10809_1067
9.5
P10809_1091
9.8
P10809_1104
15.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 88.0
Samples: 4
Max nTPM: 97.1
Min nTPM: 76.7
RHH5310_R3677
76.7
RHH5218_R3590
86.4
RHH5247_R3619
91.9
RHH5276_R3648
97.1
Naive B-cell nTPM: 79.2
Samples: 4
Max nTPM: 97.6
Min nTPM: 62.8
RHH5308_R3675
62.8
RHH5216_R3588
92.3
RHH5245_R3617
97.6
RHH5274_R3646
64.1
Non-switched memory B-cell nTPM: 69.4
Samples: 4
Max nTPM: 80.0
Min nTPM: 55.3
RHH5309_R3676
80.0
RHH5217_R3589
76.5
RHH5246_R3618
55.3
RHH5275_R3647
65.9
Plasmablast nTPM: 73.4
Samples: 4
Max nTPM: 90.1
Min nTPM: 64.7
RHH5312_R3679
90.1
RHH5220_R3592
72.3
RHH5249_R3621
66.6
RHH5278_R3650
64.7
Switched memory B-cell nTPM: 85.0
Samples: 4
Max nTPM: 94.6
Min nTPM: 78.6
RHH5311_R3678
78.6
RHH5219_R3591
81.7
RHH5248_R3620
94.6
RHH5277_R3649
84.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.9
Schmiedel sample id
TPM
Naive B-cell TPM: 109.9
Samples: 91
Max TPM: 161.7
Min TPM: 64.1
B_CELL_NAIVE_1
161.7
B_CELL_NAIVE_2
157.6
B_CELL_NAIVE_3
144.3
B_CELL_NAIVE_4
143.1
B_CELL_NAIVE_5
140.1
B_CELL_NAIVE_6
134.5
B_CELL_NAIVE_7
132.9
B_CELL_NAIVE_8
130.5
B_CELL_NAIVE_9
130.3
B_CELL_NAIVE_10
129.6
B_CELL_NAIVE_11
129.4
B_CELL_NAIVE_12
128.4
B_CELL_NAIVE_13
127.7
B_CELL_NAIVE_14
127.1
B_CELL_NAIVE_15
126.1
B_CELL_NAIVE_16
123.9
B_CELL_NAIVE_17
123.7
B_CELL_NAIVE_18
123.1
B_CELL_NAIVE_19
122.5
B_CELL_NAIVE_20
121.5
B_CELL_NAIVE_21
121.2
B_CELL_NAIVE_22
119.3
B_CELL_NAIVE_23
118.2
B_CELL_NAIVE_24
117.8
B_CELL_NAIVE_25
117.4
B_CELL_NAIVE_26
116.9
B_CELL_NAIVE_27
116.8
B_CELL_NAIVE_28
116.6
B_CELL_NAIVE_29
116.1
B_CELL_NAIVE_30
116.0
B_CELL_NAIVE_31
115.9
B_CELL_NAIVE_32
115.8
B_CELL_NAIVE_33
115.3
B_CELL_NAIVE_34
114.9
B_CELL_NAIVE_35
114.9
B_CELL_NAIVE_36
114.4
B_CELL_NAIVE_37
114.2
B_CELL_NAIVE_38
114.1
B_CELL_NAIVE_39
112.9
B_CELL_NAIVE_40
112.8
B_CELL_NAIVE_41
112.3
B_CELL_NAIVE_42
112.2
B_CELL_NAIVE_43
110.8
B_CELL_NAIVE_44
108.7
B_CELL_NAIVE_45
108.3
B_CELL_NAIVE_46
108.1
B_CELL_NAIVE_47
107.9
B_CELL_NAIVE_48
107.4
B_CELL_NAIVE_49
107.3
B_CELL_NAIVE_50
107.2
B_CELL_NAIVE_51
106.8
B_CELL_NAIVE_52
106.7
B_CELL_NAIVE_53
105.4
B_CELL_NAIVE_54
105.1
B_CELL_NAIVE_55
105.1
B_CELL_NAIVE_56
104.8
B_CELL_NAIVE_57
104.7
B_CELL_NAIVE_58
103.8
B_CELL_NAIVE_59
103.4
B_CELL_NAIVE_60
103.1
B_CELL_NAIVE_61
102.4
B_CELL_NAIVE_62
102.2
B_CELL_NAIVE_63
102.0
B_CELL_NAIVE_64
101.8
B_CELL_NAIVE_65
101.1
B_CELL_NAIVE_66
101.0
B_CELL_NAIVE_67
100.7
B_CELL_NAIVE_68
99.4
B_CELL_NAIVE_69
98.9
B_CELL_NAIVE_70
98.2
B_CELL_NAIVE_71
97.8
B_CELL_NAIVE_72
97.5
B_CELL_NAIVE_73
96.7
B_CELL_NAIVE_74
96.7
B_CELL_NAIVE_75
95.1
B_CELL_NAIVE_76
95.1
B_CELL_NAIVE_77
94.6
B_CELL_NAIVE_78
94.4
B_CELL_NAIVE_79
93.3
B_CELL_NAIVE_80
92.1
B_CELL_NAIVE_81
91.3
B_CELL_NAIVE_82
90.8
B_CELL_NAIVE_83
89.3
B_CELL_NAIVE_84
88.3
B_CELL_NAIVE_85
86.7
B_CELL_NAIVE_86
86.4
B_CELL_NAIVE_87
85.7
B_CELL_NAIVE_88
85.5
B_CELL_NAIVE_89
78.6
B_CELL_NAIVE_90
77.6
B_CELL_NAIVE_91
64.1
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The Human Protein Atlas project is funded
