A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.3
nTPM
Monaco:
26.9
nTPM
Schmiedel:
17.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.3
HPA sample
nTPM
Classical monocyte nTPM: 4.9
Samples: 6
Max nTPM: 6.1
Min nTPM: 3.6
P10809_1003
5.8
P10809_1020
5.8
P10809_1039
6.1
P10809_1058
4.1
P10809_1080
3.6
P10809_1107
4.1
Intermediate monocyte nTPM: 3.6
Samples: 6
Max nTPM: 5.8
Min nTPM: 2.4
P10809_1004
5.8
P10809_1023
4.4
P10809_1042
2.4
P10809_1061
3.0
P10809_1081
3.7
P10809_1108
2.5
Non-classical monocyte nTPM: 6.3
Samples: 5
Max nTPM: 14.4
Min nTPM: 3.0
P10809_1005
3.7
P10809_1053
5.9
P10809_1072
14.4
P10809_1082
3.0
P10809_1109
4.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.9
Monaco sample
nTPM
Classical monocyte nTPM: 22.0
Samples: 4
Max nTPM: 35.9
Min nTPM: 16.7
RHH5313_R3680
17.4
RHH5221_R3593
35.9
RHH5250_R3622
16.7
RHH5279_R3651
18.1
Intermediate monocyte nTPM: 16.5
Samples: 4
Max nTPM: 29.2
Min nTPM: 5.8
RHH5314_R3681
20.8
RHH5222_R3594
29.2
RHH5251_R3623
5.8
RHH5280_R3652
10.3
Non-classical monocyte nTPM: 26.9
Samples: 4
Max nTPM: 31.6
Min nTPM: 20.0
RHH5315_R3682
25.8
RHH5223_R3595
30.0
RHH5252_R3624
20.0
RHH5281_R3653
31.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.9
Schmiedel sample id
TPM
Classical monocyte TPM: 15.6
Samples: 91
Max TPM: 23.1
Min TPM: 10.8
MONOCYTES_1
23.1
MONOCYTES_2
21.2
MONOCYTES_3
19.9
MONOCYTES_4
19.2
MONOCYTES_5
19.2
MONOCYTES_6
19.1
MONOCYTES_7
19.0
MONOCYTES_8
19.0
MONOCYTES_9
18.7
MONOCYTES_10
18.6
MONOCYTES_11
18.5
MONOCYTES_12
18.4
MONOCYTES_13
18.4
MONOCYTES_14
18.1
MONOCYTES_15
18.1
MONOCYTES_16
18.1
MONOCYTES_17
18.0
MONOCYTES_18
18.0
MONOCYTES_19
18.0
MONOCYTES_20
17.9
MONOCYTES_21
17.8
MONOCYTES_22
17.8
MONOCYTES_23
17.8
MONOCYTES_24
17.6
MONOCYTES_25
17.3
MONOCYTES_26
17.3
MONOCYTES_27
17.2
MONOCYTES_28
17.2
MONOCYTES_29
17.1
MONOCYTES_30
17.0
MONOCYTES_31
17.0
MONOCYTES_32
16.7
MONOCYTES_33
16.4
MONOCYTES_34
16.4
MONOCYTES_35
16.2
MONOCYTES_36
16.2
MONOCYTES_37
15.9
MONOCYTES_38
15.9
MONOCYTES_39
15.9
MONOCYTES_40
15.8
MONOCYTES_41
15.8
MONOCYTES_42
15.6
MONOCYTES_43
15.6
MONOCYTES_44
15.5
MONOCYTES_45
15.5
MONOCYTES_46
15.4
MONOCYTES_47
15.1
MONOCYTES_48
15.0
MONOCYTES_49
14.9
MONOCYTES_50
14.9
MONOCYTES_51
14.8
MONOCYTES_52
14.8
MONOCYTES_53
14.7
MONOCYTES_54
14.6
MONOCYTES_55
14.6
MONOCYTES_56
14.6
MONOCYTES_57
14.5
MONOCYTES_58
14.4
MONOCYTES_59
14.3
MONOCYTES_60
14.3
MONOCYTES_61
14.2
MONOCYTES_62
14.2
MONOCYTES_63
14.2
MONOCYTES_64
14.2
MONOCYTES_65
14.1
MONOCYTES_66
14.1
MONOCYTES_67
14.0
MONOCYTES_68
13.8
MONOCYTES_69
13.7
MONOCYTES_70
13.7
MONOCYTES_71
13.7
MONOCYTES_72
13.6
MONOCYTES_73
13.6
MONOCYTES_74
13.5
MONOCYTES_75
13.3
MONOCYTES_76
13.3
MONOCYTES_77
13.2
MONOCYTES_78
13.0
MONOCYTES_79
13.0
MONOCYTES_80
12.8
MONOCYTES_81
12.5
MONOCYTES_82
12.3
MONOCYTES_83
12.2
MONOCYTES_84
12.2
MONOCYTES_85
12.2
MONOCYTES_86
12.2
MONOCYTES_87
12.0
MONOCYTES_88
11.3
MONOCYTES_89
11.3
MONOCYTES_90
10.9
MONOCYTES_91
10.8
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Non-classical monocyte TPM: 17.9
Samples: 90
Max TPM: 28.0
Min TPM: 12.5
M2_1
28.0
M2_2
26.7
M2_3
24.5
M2_4
24.2
M2_5
23.9
M2_6
23.2
M2_7
22.4
M2_8
22.4
M2_9
22.3
M2_10
22.3
M2_11
21.8
M2_12
21.7
M2_13
21.6
M2_14
21.2
M2_15
20.9
M2_16
20.5
M2_17
20.4
M2_18
20.2
M2_19
20.0
M2_20
19.9
M2_21
19.3
M2_22
19.1
M2_23
18.9
M2_24
18.8
M2_25
18.6
M2_26
18.5
M2_27
18.5
M2_28
18.4
M2_29
18.4
M2_30
18.3
M2_31
18.2
M2_32
18.2
M2_33
18.1
M2_34
18.1
M2_35
18.1
M2_36
18.1
M2_37
18.1
M2_38
18.0
M2_39
17.9
M2_40
17.9
M2_41
17.9
M2_42
17.7
M2_43
17.7
M2_44
17.7
M2_45
17.6
M2_46
17.6
M2_47
17.6
M2_48
17.5
M2_49
17.5
M2_50
17.4
M2_51
17.4
M2_52
17.4
M2_53
17.3
M2_54
17.3
M2_55
17.2
M2_56
17.2
M2_57
17.2
M2_58
17.2
M2_59
16.7
M2_60
16.5
M2_61
16.4
M2_62
16.2
M2_63
16.1
M2_64
16.1
M2_65
16.0
M2_66
15.9
M2_67
15.8
M2_68
15.8
M2_69
15.7
M2_70
15.6
M2_71
15.6
M2_72
15.4
M2_73
15.3
M2_74
15.1
M2_75
15.0
M2_76
14.9
M2_77
14.9
M2_78
14.9
M2_79
14.6
M2_80
14.5
M2_81
14.2
M2_82
14.1
M2_83
14.1
M2_84
13.9
M2_85
13.7
M2_86
13.6
M2_87
13.5
M2_88
13.1
M2_89
13.0
M2_90
12.5
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