A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
53.2
nTPM
Monaco:
151.2
nTPM
Schmiedel:
46.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.2
HPA sample
nTPM
Memory B-cell nTPM: 53.2
Samples: 6
Max nTPM: 74.1
Min nTPM: 28.4
P10809_1017
52.6
P10809_1025
65.1
P10809_1044
40.6
P10809_1063
58.2
P10809_1092
74.1
P10809_1105
28.4
Naive B-cell nTPM: 43.7
Samples: 6
Max nTPM: 102.1
Min nTPM: 22.4
P10809_1011
38.2
P10809_1029
42.9
P10809_1048
102.1
P10809_1067
22.4
P10809_1091
28.8
P10809_1104
27.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 79.4
Samples: 4
Max nTPM: 108.8
Min nTPM: 54.2
RHH5310_R3677
73.0
RHH5218_R3590
81.6
RHH5247_R3619
108.8
RHH5276_R3648
54.2
Naive B-cell nTPM: 132.9
Samples: 4
Max nTPM: 220.1
Min nTPM: 77.5
RHH5308_R3675
106.4
RHH5216_R3588
127.6
RHH5245_R3617
220.1
RHH5274_R3646
77.5
Non-switched memory B-cell nTPM: 151.2
Samples: 4
Max nTPM: 166.6
Min nTPM: 134.9
RHH5309_R3676
157.8
RHH5217_R3589
134.9
RHH5246_R3618
145.4
RHH5275_R3647
166.6
Plasmablast nTPM: 72.4
Samples: 4
Max nTPM: 80.6
Min nTPM: 61.2
RHH5312_R3679
67.6
RHH5220_R3592
61.2
RHH5249_R3621
80.6
RHH5278_R3650
80.3
Switched memory B-cell nTPM: 88.0
Samples: 4
Max nTPM: 109.9
Min nTPM: 67.9
RHH5311_R3678
89.5
RHH5219_R3591
67.9
RHH5248_R3620
109.9
RHH5277_R3649
84.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.1
Schmiedel sample id
TPM
Naive B-cell TPM: 46.1
Samples: 91
Max TPM: 68.5
Min TPM: 30.5
B_CELL_NAIVE_1
68.5
B_CELL_NAIVE_2
64.1
B_CELL_NAIVE_3
59.9
B_CELL_NAIVE_4
59.4
B_CELL_NAIVE_5
58.8
B_CELL_NAIVE_6
57.9
B_CELL_NAIVE_7
57.6
B_CELL_NAIVE_8
55.2
B_CELL_NAIVE_9
55.1
B_CELL_NAIVE_10
54.8
B_CELL_NAIVE_11
54.7
B_CELL_NAIVE_12
54.4
B_CELL_NAIVE_13
53.8
B_CELL_NAIVE_14
53.8
B_CELL_NAIVE_15
53.8
B_CELL_NAIVE_16
53.4
B_CELL_NAIVE_17
53.3
B_CELL_NAIVE_18
53.1
B_CELL_NAIVE_19
52.9
B_CELL_NAIVE_20
52.5
B_CELL_NAIVE_21
52.1
B_CELL_NAIVE_22
52.0
B_CELL_NAIVE_23
51.7
B_CELL_NAIVE_24
51.7
B_CELL_NAIVE_25
51.3
B_CELL_NAIVE_26
50.6
B_CELL_NAIVE_27
50.6
B_CELL_NAIVE_28
50.5
B_CELL_NAIVE_29
50.0
B_CELL_NAIVE_30
49.3
B_CELL_NAIVE_31
48.7
B_CELL_NAIVE_32
48.5
B_CELL_NAIVE_33
48.5
B_CELL_NAIVE_34
48.2
B_CELL_NAIVE_35
48.2
B_CELL_NAIVE_36
47.2
B_CELL_NAIVE_37
47.2
B_CELL_NAIVE_38
46.8
B_CELL_NAIVE_39
46.8
B_CELL_NAIVE_40
46.7
B_CELL_NAIVE_41
46.5
B_CELL_NAIVE_42
46.4
B_CELL_NAIVE_43
46.2
B_CELL_NAIVE_44
45.6
B_CELL_NAIVE_45
45.5
B_CELL_NAIVE_46
45.3
B_CELL_NAIVE_47
45.2
B_CELL_NAIVE_48
45.2
B_CELL_NAIVE_49
45.0
B_CELL_NAIVE_50
45.0
B_CELL_NAIVE_51
44.7
B_CELL_NAIVE_52
44.7
B_CELL_NAIVE_53
44.1
B_CELL_NAIVE_54
44.0
B_CELL_NAIVE_55
44.0
B_CELL_NAIVE_56
43.9
B_CELL_NAIVE_57
43.7
B_CELL_NAIVE_58
43.7
B_CELL_NAIVE_59
43.7
B_CELL_NAIVE_60
43.4
B_CELL_NAIVE_61
43.1
B_CELL_NAIVE_62
42.7
B_CELL_NAIVE_63
41.7
B_CELL_NAIVE_64
41.7
B_CELL_NAIVE_65
41.3
B_CELL_NAIVE_66
41.2
B_CELL_NAIVE_67
40.9
B_CELL_NAIVE_68
40.8
B_CELL_NAIVE_69
40.6
B_CELL_NAIVE_70
40.0
B_CELL_NAIVE_71
39.8
B_CELL_NAIVE_72
39.7
B_CELL_NAIVE_73
39.5
B_CELL_NAIVE_74
39.5
B_CELL_NAIVE_75
39.2
B_CELL_NAIVE_76
38.8
B_CELL_NAIVE_77
38.5
B_CELL_NAIVE_78
38.4
B_CELL_NAIVE_79
38.3
B_CELL_NAIVE_80
38.1
B_CELL_NAIVE_81
38.1
B_CELL_NAIVE_82
38.1
B_CELL_NAIVE_83
37.9
B_CELL_NAIVE_84
36.9
B_CELL_NAIVE_85
35.0
B_CELL_NAIVE_86
33.9
B_CELL_NAIVE_87
33.9
B_CELL_NAIVE_88
33.6
B_CELL_NAIVE_89
32.7
B_CELL_NAIVE_90
30.9
B_CELL_NAIVE_91
30.5
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The Human Protein Atlas project is funded
