A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.3
nTPM
Monaco:
58.0
nTPM
Schmiedel:
13.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.3
HPA sample
nTPM
Classical monocyte nTPM: 24.3
Samples: 6
Max nTPM: 35.6
Min nTPM: 13.2
P10809_1003
25.3
P10809_1020
35.6
P10809_1039
30.6
P10809_1058
19.9
P10809_1080
21.4
P10809_1107
13.2
Intermediate monocyte nTPM: 16.4
Samples: 6
Max nTPM: 35.2
Min nTPM: 6.7
P10809_1004
12.9
P10809_1023
21.9
P10809_1042
9.2
P10809_1061
35.2
P10809_1081
12.7
P10809_1108
6.7
Non-classical monocyte nTPM: 10.4
Samples: 5
Max nTPM: 15.4
Min nTPM: 2.8
P10809_1005
12.0
P10809_1053
14.5
P10809_1072
15.4
P10809_1082
7.1
P10809_1109
2.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.0
Monaco sample
nTPM
Classical monocyte nTPM: 58.0
Samples: 4
Max nTPM: 89.4
Min nTPM: 32.7
RHH5313_R3680
89.4
RHH5221_R3593
39.4
RHH5250_R3622
32.7
RHH5279_R3651
70.3
Intermediate monocyte nTPM: 45.3
Samples: 4
Max nTPM: 73.7
Min nTPM: 18.7
RHH5314_R3681
73.7
RHH5222_R3594
32.6
RHH5251_R3623
18.7
RHH5280_R3652
56.3
Non-classical monocyte nTPM: 46.4
Samples: 4
Max nTPM: 73.5
Min nTPM: 26.8
RHH5315_R3682
55.4
RHH5223_R3595
29.8
RHH5252_R3624
26.8
RHH5281_R3653
73.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.8
Schmiedel sample id
TPM
Classical monocyte TPM: 13.8
Samples: 91
Max TPM: 30.9
Min TPM: 6.5
MONOCYTES_1
30.9
MONOCYTES_2
25.7
MONOCYTES_3
25.2
MONOCYTES_4
24.6
MONOCYTES_5
22.6
MONOCYTES_6
22.1
MONOCYTES_7
21.6
MONOCYTES_8
20.8
MONOCYTES_9
20.0
MONOCYTES_10
19.5
MONOCYTES_11
19.2
MONOCYTES_12
18.9
MONOCYTES_13
18.7
MONOCYTES_14
18.6
MONOCYTES_15
18.3
MONOCYTES_16
18.0
MONOCYTES_17
17.9
MONOCYTES_18
17.8
MONOCYTES_19
17.8
MONOCYTES_20
17.7
MONOCYTES_21
17.7
MONOCYTES_22
17.7
MONOCYTES_23
17.2
MONOCYTES_24
17.1
MONOCYTES_25
17.1
MONOCYTES_26
17.0
MONOCYTES_27
16.5
MONOCYTES_28
16.4
MONOCYTES_29
16.3
MONOCYTES_30
15.9
MONOCYTES_31
15.2
MONOCYTES_32
15.0
MONOCYTES_33
15.0
MONOCYTES_34
14.9
MONOCYTES_35
14.8
MONOCYTES_36
14.6
MONOCYTES_37
14.3
MONOCYTES_38
14.3
MONOCYTES_39
13.8
MONOCYTES_40
13.7
MONOCYTES_41
13.7
MONOCYTES_42
13.7
MONOCYTES_43
13.6
MONOCYTES_44
13.5
MONOCYTES_45
13.4
MONOCYTES_46
12.6
MONOCYTES_47
12.5
MONOCYTES_48
12.4
MONOCYTES_49
12.3
MONOCYTES_50
12.2
MONOCYTES_51
12.2
MONOCYTES_52
12.2
MONOCYTES_53
12.1
MONOCYTES_54
12.1
MONOCYTES_55
11.7
MONOCYTES_56
11.6
MONOCYTES_57
11.6
MONOCYTES_58
11.4
MONOCYTES_59
11.3
MONOCYTES_60
11.2
MONOCYTES_61
11.2
MONOCYTES_62
11.2
MONOCYTES_63
10.8
MONOCYTES_64
10.8
MONOCYTES_65
10.6
MONOCYTES_66
10.4
MONOCYTES_67
10.3
MONOCYTES_68
10.2
MONOCYTES_69
10.1
MONOCYTES_70
10.1
MONOCYTES_71
9.9
MONOCYTES_72
9.6
MONOCYTES_73
9.3
MONOCYTES_74
9.1
MONOCYTES_75
8.9
MONOCYTES_76
8.9
MONOCYTES_77
8.8
MONOCYTES_78
8.5
MONOCYTES_79
8.3
MONOCYTES_80
8.2
MONOCYTES_81
8.1
MONOCYTES_82
7.9
MONOCYTES_83
7.8
MONOCYTES_84
7.8
MONOCYTES_85
7.7
MONOCYTES_86
7.6
MONOCYTES_87
7.5
MONOCYTES_88
7.2
MONOCYTES_89
6.9
MONOCYTES_90
6.7
MONOCYTES_91
6.5
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Non-classical monocyte TPM: 8.4
Samples: 90
Max TPM: 15.2
Min TPM: 2.6
M2_1
15.2
M2_2
14.4
M2_3
14.1
M2_4
14.1
M2_5
13.9
M2_6
13.5
M2_7
13.4
M2_8
12.6
M2_9
12.4
M2_10
12.2
M2_11
12.1
M2_12
11.8
M2_13
11.7
M2_14
11.7
M2_15
11.4
M2_16
11.2
M2_17
10.9
M2_18
10.6
M2_19
10.4
M2_20
10.4
M2_21
10.3
M2_22
10.2
M2_23
10.2
M2_24
10.2
M2_25
9.9
M2_26
9.9
M2_27
9.5
M2_28
9.4
M2_29
9.3
M2_30
9.3
M2_31
9.3
M2_32
9.3
M2_33
9.3
M2_34
9.2
M2_35
9.1
M2_36
8.6
M2_37
8.5
M2_38
8.5
M2_39
8.4
M2_40
8.4
M2_41
8.3
M2_42
8.3
M2_43
8.2
M2_44
8.2
M2_45
8.1
M2_46
8.1
M2_47
8.1
M2_48
8.0
M2_49
7.9
M2_50
7.8
M2_51
7.6
M2_52
7.6
M2_53
7.6
M2_54
7.5
M2_55
7.5
M2_56
7.4
M2_57
7.4
M2_58
7.3
M2_59
7.0
M2_60
7.0
M2_61
6.9
M2_62
6.9
M2_63
6.7
M2_64
6.7
M2_65
6.6
M2_66
6.5
M2_67
6.5
M2_68
6.5
M2_69
6.3
M2_70
6.2
M2_71
6.0
M2_72
6.0
M2_73
6.0
M2_74
5.8
M2_75
5.8
M2_76
5.7
M2_77
5.5
M2_78
5.1
M2_79
5.0
M2_80
4.9
M2_81
4.9
M2_82
4.8
M2_83
4.8
M2_84
4.7
M2_85
4.7
M2_86
4.6
M2_87
3.8
M2_88
3.8
M2_89
3.4
M2_90
2.6
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