A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.6
nTPM
Monaco:
46.1
nTPM
Schmiedel:
83.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.6
HPA sample
nTPM
Memory B-cell nTPM: 6.6
Samples: 6
Max nTPM: 9.4
Min nTPM: 2.9
P10809_1017
8.6
P10809_1025
6.2
P10809_1044
2.9
P10809_1063
4.9
P10809_1092
7.7
P10809_1105
9.4
Naive B-cell nTPM: 8.6
Samples: 6
Max nTPM: 11.5
Min nTPM: 6.4
P10809_1011
7.6
P10809_1029
6.4
P10809_1048
7.0
P10809_1067
11.5
P10809_1091
9.6
P10809_1104
9.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 28.1
Samples: 4
Max nTPM: 32.9
Min nTPM: 24.5
RHH5310_R3677
24.5
RHH5218_R3590
32.9
RHH5247_R3619
27.8
RHH5276_R3648
27.2
Naive B-cell nTPM: 46.1
Samples: 4
Max nTPM: 59.5
Min nTPM: 32.5
RHH5308_R3675
32.5
RHH5216_R3588
45.1
RHH5245_R3617
59.5
RHH5274_R3646
47.1
Non-switched memory B-cell nTPM: 43.1
Samples: 4
Max nTPM: 51.4
Min nTPM: 38.1
RHH5309_R3676
38.1
RHH5217_R3589
40.9
RHH5246_R3618
51.4
RHH5275_R3647
42.1
Plasmablast nTPM: 16.7
Samples: 4
Max nTPM: 18.8
Min nTPM: 13.6
RHH5312_R3679
15.7
RHH5220_R3592
13.6
RHH5249_R3621
18.7
RHH5278_R3650
18.8
Switched memory B-cell nTPM: 26.4
Samples: 4
Max nTPM: 41.7
Min nTPM: 15.9
RHH5311_R3678
19.7
RHH5219_R3591
15.9
RHH5248_R3620
28.4
RHH5277_R3649
41.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
83.9
Schmiedel sample id
TPM
Naive B-cell TPM: 83.9
Samples: 91
Max TPM: 143.9
Min TPM: 40.4
B_CELL_NAIVE_1
143.9
B_CELL_NAIVE_2
142.1
B_CELL_NAIVE_3
136.3
B_CELL_NAIVE_4
135.1
B_CELL_NAIVE_5
125.0
B_CELL_NAIVE_6
119.7
B_CELL_NAIVE_7
111.4
B_CELL_NAIVE_8
111.0
B_CELL_NAIVE_9
105.8
B_CELL_NAIVE_10
104.5
B_CELL_NAIVE_11
104.4
B_CELL_NAIVE_12
102.6
B_CELL_NAIVE_13
101.5
B_CELL_NAIVE_14
101.4
B_CELL_NAIVE_15
100.7
B_CELL_NAIVE_16
97.4
B_CELL_NAIVE_17
95.4
B_CELL_NAIVE_18
95.2
B_CELL_NAIVE_19
95.1
B_CELL_NAIVE_20
94.7
B_CELL_NAIVE_21
94.6
B_CELL_NAIVE_22
93.9
B_CELL_NAIVE_23
93.8
B_CELL_NAIVE_24
93.8
B_CELL_NAIVE_25
91.9
B_CELL_NAIVE_26
91.2
B_CELL_NAIVE_27
91.0
B_CELL_NAIVE_28
90.0
B_CELL_NAIVE_29
89.9
B_CELL_NAIVE_30
89.8
B_CELL_NAIVE_31
89.7
B_CELL_NAIVE_32
89.6
B_CELL_NAIVE_33
89.4
B_CELL_NAIVE_34
89.3
B_CELL_NAIVE_35
88.7
B_CELL_NAIVE_36
88.6
B_CELL_NAIVE_37
88.3
B_CELL_NAIVE_38
86.7
B_CELL_NAIVE_39
85.6
B_CELL_NAIVE_40
85.4
B_CELL_NAIVE_41
84.0
B_CELL_NAIVE_42
82.1
B_CELL_NAIVE_43
81.6
B_CELL_NAIVE_44
81.3
B_CELL_NAIVE_45
81.3
B_CELL_NAIVE_46
81.1
B_CELL_NAIVE_47
81.1
B_CELL_NAIVE_48
78.5
B_CELL_NAIVE_49
77.8
B_CELL_NAIVE_50
77.8
B_CELL_NAIVE_51
77.3
B_CELL_NAIVE_52
76.7
B_CELL_NAIVE_53
76.4
B_CELL_NAIVE_54
76.0
B_CELL_NAIVE_55
76.0
B_CELL_NAIVE_56
75.6
B_CELL_NAIVE_57
75.4
B_CELL_NAIVE_58
74.5
B_CELL_NAIVE_59
74.3
B_CELL_NAIVE_60
74.2
B_CELL_NAIVE_61
74.1
B_CELL_NAIVE_62
73.7
B_CELL_NAIVE_63
73.1
B_CELL_NAIVE_64
72.3
B_CELL_NAIVE_65
71.9
B_CELL_NAIVE_66
71.6
B_CELL_NAIVE_67
71.2
B_CELL_NAIVE_68
70.4
B_CELL_NAIVE_69
70.1
B_CELL_NAIVE_70
69.9
B_CELL_NAIVE_71
69.6
B_CELL_NAIVE_72
69.5
B_CELL_NAIVE_73
69.0
B_CELL_NAIVE_74
68.1
B_CELL_NAIVE_75
67.7
B_CELL_NAIVE_76
67.2
B_CELL_NAIVE_77
67.1
B_CELL_NAIVE_78
66.6
B_CELL_NAIVE_79
65.8
B_CELL_NAIVE_80
63.6
B_CELL_NAIVE_81
63.5
B_CELL_NAIVE_82
63.2
B_CELL_NAIVE_83
63.2
B_CELL_NAIVE_84
62.7
B_CELL_NAIVE_85
62.1
B_CELL_NAIVE_86
61.8
B_CELL_NAIVE_87
61.4
B_CELL_NAIVE_88
61.2
B_CELL_NAIVE_89
60.1
B_CELL_NAIVE_90
58.8
B_CELL_NAIVE_91
40.4
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The Human Protein Atlas project is funded
