A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
11.6
nTPM
Monaco:
40.3
nTPM
Schmiedel:
34.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.6
HPA sample
nTPM
Classical monocyte nTPM: 6.3
Samples: 6
Max nTPM: 7.2
Min nTPM: 4.7
P10809_1003
7.2
P10809_1020
6.7
P10809_1039
6.9
P10809_1058
4.7
P10809_1080
7.1
P10809_1107
5.2
Intermediate monocyte nTPM: 5.4
Samples: 6
Max nTPM: 9.8
Min nTPM: 2.6
P10809_1004
9.8
P10809_1023
2.6
P10809_1042
6.2
P10809_1061
4.6
P10809_1081
5.3
P10809_1108
4.1
Non-classical monocyte nTPM: 11.6
Samples: 5
Max nTPM: 20.0
Min nTPM: 4.9
P10809_1005
10.7
P10809_1053
11.4
P10809_1072
20.0
P10809_1082
4.9
P10809_1109
10.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.3
Monaco sample
nTPM
Classical monocyte nTPM: 36.6
Samples: 4
Max nTPM: 46.8
Min nTPM: 26.5
RHH5313_R3680
31.9
RHH5221_R3593
46.8
RHH5250_R3622
41.3
RHH5279_R3651
26.5
Intermediate monocyte nTPM: 28.2
Samples: 4
Max nTPM: 39.6
Min nTPM: 20.9
RHH5314_R3681
20.9
RHH5222_R3594
39.6
RHH5251_R3623
23.9
RHH5280_R3652
28.2
Non-classical monocyte nTPM: 40.3
Samples: 4
Max nTPM: 58.8
Min nTPM: 33.3
RHH5315_R3682
33.3
RHH5223_R3595
58.8
RHH5252_R3624
34.1
RHH5281_R3653
35.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.7
Schmiedel sample id
TPM
Classical monocyte TPM: 19.6
Samples: 91
Max TPM: 28.1
Min TPM: 13.1
MONOCYTES_1
28.1
MONOCYTES_2
27.2
MONOCYTES_3
26.8
MONOCYTES_4
26.8
MONOCYTES_5
25.7
MONOCYTES_6
24.6
MONOCYTES_7
24.6
MONOCYTES_8
24.6
MONOCYTES_9
24.5
MONOCYTES_10
24.5
MONOCYTES_11
24.1
MONOCYTES_12
24.1
MONOCYTES_13
23.5
MONOCYTES_14
23.4
MONOCYTES_15
23.3
MONOCYTES_16
23.0
MONOCYTES_17
22.9
MONOCYTES_18
22.9
MONOCYTES_19
22.9
MONOCYTES_20
22.8
MONOCYTES_21
21.8
MONOCYTES_22
21.8
MONOCYTES_23
21.7
MONOCYTES_24
21.6
MONOCYTES_25
21.6
MONOCYTES_26
21.6
MONOCYTES_27
21.5
MONOCYTES_28
21.3
MONOCYTES_29
21.2
MONOCYTES_30
21.2
MONOCYTES_31
21.2
MONOCYTES_32
21.2
MONOCYTES_33
21.2
MONOCYTES_34
20.7
MONOCYTES_35
20.7
MONOCYTES_36
20.6
MONOCYTES_37
20.4
MONOCYTES_38
20.4
MONOCYTES_39
20.1
MONOCYTES_40
19.9
MONOCYTES_41
19.8
MONOCYTES_42
19.7
MONOCYTES_43
19.4
MONOCYTES_44
19.3
MONOCYTES_45
19.2
MONOCYTES_46
19.2
MONOCYTES_47
19.0
MONOCYTES_48
19.0
MONOCYTES_49
19.0
MONOCYTES_50
18.9
MONOCYTES_51
18.9
MONOCYTES_52
18.8
MONOCYTES_53
18.8
MONOCYTES_54
18.7
MONOCYTES_55
18.6
MONOCYTES_56
18.4
MONOCYTES_57
18.3
MONOCYTES_58
18.0
MONOCYTES_59
18.0
MONOCYTES_60
17.9
MONOCYTES_61
17.8
MONOCYTES_62
17.6
MONOCYTES_63
17.6
MONOCYTES_64
17.5
MONOCYTES_65
17.5
MONOCYTES_66
17.3
MONOCYTES_67
17.2
MONOCYTES_68
17.2
MONOCYTES_69
17.2
MONOCYTES_70
17.0
MONOCYTES_71
16.9
MONOCYTES_72
16.9
MONOCYTES_73
16.8
MONOCYTES_74
16.7
MONOCYTES_75
16.6
MONOCYTES_76
16.5
MONOCYTES_77
16.2
MONOCYTES_78
16.2
MONOCYTES_79
16.0
MONOCYTES_80
15.6
MONOCYTES_81
14.9
MONOCYTES_82
14.7
MONOCYTES_83
14.7
MONOCYTES_84
14.5
MONOCYTES_85
14.5
MONOCYTES_86
14.5
MONOCYTES_87
14.3
MONOCYTES_88
14.1
MONOCYTES_89
14.1
MONOCYTES_90
13.5
MONOCYTES_91
13.1
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Non-classical monocyte TPM: 34.7
Samples: 90
Max TPM: 53.3
Min TPM: 21.0
M2_1
53.3
M2_2
50.0
M2_3
49.8
M2_4
48.5
M2_5
46.5
M2_6
46.2
M2_7
45.9
M2_8
43.7
M2_9
43.4
M2_10
43.0
M2_11
43.0
M2_12
42.9
M2_13
42.5
M2_14
42.1
M2_15
41.4
M2_16
40.9
M2_17
40.2
M2_18
39.6
M2_19
39.1
M2_20
38.7
M2_21
38.5
M2_22
38.5
M2_23
38.1
M2_24
38.0
M2_25
37.9
M2_26
37.6
M2_27
37.3
M2_28
37.1
M2_29
36.8
M2_30
36.7
M2_31
36.5
M2_32
36.3
M2_33
36.2
M2_34
36.2
M2_35
36.1
M2_36
36.0
M2_37
35.9
M2_38
35.7
M2_39
35.5
M2_40
35.3
M2_41
35.0
M2_42
34.9
M2_43
34.8
M2_44
34.7
M2_45
34.6
M2_46
34.3
M2_47
34.0
M2_48
33.8
M2_49
33.8
M2_50
33.7
M2_51
33.2
M2_52
33.2
M2_53
33.1
M2_54
32.8
M2_55
32.6
M2_56
32.5
M2_57
32.4
M2_58
32.3
M2_59
32.1
M2_60
32.0
M2_61
31.6
M2_62
31.6
M2_63
31.2
M2_64
31.1
M2_65
30.7
M2_66
30.6
M2_67
30.6
M2_68
30.4
M2_69
29.9
M2_70
29.6
M2_71
29.3
M2_72
29.1
M2_73
29.0
M2_74
28.6
M2_75
28.3
M2_76
28.2
M2_77
28.1
M2_78
26.8
M2_79
26.5
M2_80
26.5
M2_81
26.5
M2_82
26.4
M2_83
26.0
M2_84
25.7
M2_85
25.7
M2_86
25.5
M2_87
25.4
M2_88
25.0
M2_89
23.5
M2_90
21.0
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