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BETA
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  • ZNF800
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:15.4 nTPM
Monaco:120.1 nTPM
Schmiedel:128.3 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

15.4
HPA sample nTPM
Memory B-cell
nTPM: 14.1
Samples: 6

Max nTPM: 17.4
Min nTPM: 9.7
P10809_1017 15.6
P10809_1025 12.9
P10809_1044 16.3
P10809_1063 12.6
P10809_1092 17.4
P10809_1105 9.7
Naive B-cell
nTPM: 15.4
Samples: 6

Max nTPM: 18.5
Min nTPM: 12.9
P10809_1011 16.7
P10809_1029 18.5
P10809_1048 15.2
P10809_1067 12.9
P10809_1091 13.4
P10809_1104 15.6

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

120.1
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 98.7
Samples: 4

Max nTPM: 147.8
Min nTPM: 52.6
RHH5310_R3677 52.6
RHH5218_R3590 147.8
RHH5247_R3619 85.2
RHH5276_R3648 109.3
Naive B-cell
nTPM: 114.9
Samples: 4

Max nTPM: 164.1
Min nTPM: 63.0
RHH5308_R3675 105.2
RHH5216_R3588 63.0
RHH5245_R3617 127.4
RHH5274_R3646 164.1
Non-switched memory B-cell
nTPM: 120.1
Samples: 4

Max nTPM: 177.9
Min nTPM: 88.2
RHH5309_R3676 88.2
RHH5217_R3589 110.0
RHH5246_R3618 104.2
RHH5275_R3647 177.9
Plasmablast
nTPM: 68.8
Samples: 4

Max nTPM: 105.4
Min nTPM: 43.9
RHH5312_R3679 43.9
RHH5220_R3592 51.5
RHH5249_R3621 74.5
RHH5278_R3650 105.4
Switched memory B-cell
nTPM: 68.2
Samples: 4

Max nTPM: 118.4
Min nTPM: 30.3
RHH5311_R3678 30.3
RHH5219_R3591 83.6
RHH5248_R3620 40.6
RHH5277_R3649 118.4

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

128.3
Schmiedel sample id TPM
Naive B-cell
TPM: 128.3
Samples: 91

Max TPM: 221.7
Min TPM: 77.3
B_CELL_NAIVE_1 221.7
B_CELL_NAIVE_2 213.3
B_CELL_NAIVE_3 200.2
B_CELL_NAIVE_4 191.0
B_CELL_NAIVE_5 178.7
B_CELL_NAIVE_6 178.3
B_CELL_NAIVE_7 176.1
B_CELL_NAIVE_8 173.5
B_CELL_NAIVE_9 164.5
B_CELL_NAIVE_10 163.6
B_CELL_NAIVE_11 163.5
B_CELL_NAIVE_12 157.8
B_CELL_NAIVE_13 156.2
B_CELL_NAIVE_14 153.0
B_CELL_NAIVE_15 152.5
B_CELL_NAIVE_16 152.1
B_CELL_NAIVE_17 151.4
B_CELL_NAIVE_18 150.5
B_CELL_NAIVE_19 150.4
B_CELL_NAIVE_20 149.4
B_CELL_NAIVE_21 148.4
B_CELL_NAIVE_22 145.5
B_CELL_NAIVE_23 142.6
B_CELL_NAIVE_24 141.0
B_CELL_NAIVE_25 139.5
B_CELL_NAIVE_26 139.4
B_CELL_NAIVE_27 138.5
B_CELL_NAIVE_28 138.4
B_CELL_NAIVE_29 138.4
B_CELL_NAIVE_30 137.5
B_CELL_NAIVE_31 136.3
B_CELL_NAIVE_32 135.4
B_CELL_NAIVE_33 135.3
B_CELL_NAIVE_34 133.3
B_CELL_NAIVE_35 132.7
B_CELL_NAIVE_36 132.4
B_CELL_NAIVE_37 130.6
B_CELL_NAIVE_38 130.0
B_CELL_NAIVE_39 129.8
B_CELL_NAIVE_40 129.7
B_CELL_NAIVE_41 129.2
B_CELL_NAIVE_42 128.8
B_CELL_NAIVE_43 128.4
B_CELL_NAIVE_44 126.7
B_CELL_NAIVE_45 125.5
B_CELL_NAIVE_46 124.8
B_CELL_NAIVE_47 124.6
B_CELL_NAIVE_48 124.2
B_CELL_NAIVE_49 122.0
B_CELL_NAIVE_50 120.2
B_CELL_NAIVE_51 120.1
B_CELL_NAIVE_52 119.4
B_CELL_NAIVE_53 119.2
B_CELL_NAIVE_54 119.0
B_CELL_NAIVE_55 118.1
B_CELL_NAIVE_56 117.0
B_CELL_NAIVE_57 116.6
B_CELL_NAIVE_58 115.9
B_CELL_NAIVE_59 114.8
B_CELL_NAIVE_60 112.5
B_CELL_NAIVE_61 111.8
B_CELL_NAIVE_62 111.0
B_CELL_NAIVE_63 110.8
B_CELL_NAIVE_64 110.6
B_CELL_NAIVE_65 110.4
B_CELL_NAIVE_66 110.0
B_CELL_NAIVE_67 108.9
B_CELL_NAIVE_68 106.8
B_CELL_NAIVE_69 106.3
B_CELL_NAIVE_70 105.6
B_CELL_NAIVE_71 104.0
B_CELL_NAIVE_72 103.9
B_CELL_NAIVE_73 102.7
B_CELL_NAIVE_74 102.4
B_CELL_NAIVE_75 102.0
B_CELL_NAIVE_76 101.6
B_CELL_NAIVE_77 101.5
B_CELL_NAIVE_78 100.4
B_CELL_NAIVE_79 100.3
B_CELL_NAIVE_80 100.1
B_CELL_NAIVE_81 97.4
B_CELL_NAIVE_82 96.8
B_CELL_NAIVE_83 96.4
B_CELL_NAIVE_84 95.5
B_CELL_NAIVE_85 94.3
B_CELL_NAIVE_86 93.4
B_CELL_NAIVE_87 90.7
B_CELL_NAIVE_88 87.9
B_CELL_NAIVE_89 87.7
B_CELL_NAIVE_90 85.6
B_CELL_NAIVE_91 77.3
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