A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.3
nTPM
Monaco:
85.4
nTPM
Schmiedel:
69.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.3
HPA sample
nTPM
Classical monocyte nTPM: 7.6
Samples: 6
Max nTPM: 9.1
Min nTPM: 5.0
P10809_1003
8.8
P10809_1020
7.4
P10809_1039
6.8
P10809_1058
8.2
P10809_1080
5.0
P10809_1107
9.1
Intermediate monocyte nTPM: 7.4
Samples: 6
Max nTPM: 12.9
Min nTPM: 3.7
P10809_1004
5.1
P10809_1023
3.7
P10809_1042
9.8
P10809_1061
12.9
P10809_1081
6.1
P10809_1108
6.6
Non-classical monocyte nTPM: 8.4
Samples: 5
Max nTPM: 15.8
Min nTPM: 0.2
P10809_1005
7.5
P10809_1053
5.0
P10809_1072
0.2
P10809_1082
13.3
P10809_1109
15.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.4
Monaco sample
nTPM
Classical monocyte nTPM: 72.2
Samples: 4
Max nTPM: 100.7
Min nTPM: 44.4
RHH5313_R3680
76.4
RHH5221_R3593
44.4
RHH5250_R3622
67.3
RHH5279_R3651
100.7
Intermediate monocyte nTPM: 84.0
Samples: 4
Max nTPM: 101.2
Min nTPM: 52.1
RHH5314_R3681
84.6
RHH5222_R3594
52.1
RHH5251_R3623
101.2
RHH5280_R3652
98.2
Non-classical monocyte nTPM: 85.5
Samples: 4
Max nTPM: 98.8
Min nTPM: 74.2
RHH5315_R3682
74.2
RHH5223_R3595
75.4
RHH5252_R3624
93.4
RHH5281_R3653
98.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.0
Schmiedel sample id
TPM
Classical monocyte TPM: 41.8
Samples: 91
Max TPM: 57.2
Min TPM: 29.2
MONOCYTES_1
57.2
MONOCYTES_2
56.9
MONOCYTES_3
54.7
MONOCYTES_4
54.5
MONOCYTES_5
51.2
MONOCYTES_6
50.1
MONOCYTES_7
49.7
MONOCYTES_8
49.6
MONOCYTES_9
49.3
MONOCYTES_10
49.2
MONOCYTES_11
49.0
MONOCYTES_12
48.8
MONOCYTES_13
48.1
MONOCYTES_14
47.8
MONOCYTES_15
47.7
MONOCYTES_16
47.1
MONOCYTES_17
46.9
MONOCYTES_18
46.8
MONOCYTES_19
46.1
MONOCYTES_20
45.9
MONOCYTES_21
45.8
MONOCYTES_22
45.7
MONOCYTES_23
45.6
MONOCYTES_24
45.4
MONOCYTES_25
45.1
MONOCYTES_26
44.9
MONOCYTES_27
44.9
MONOCYTES_28
44.4
MONOCYTES_29
44.3
MONOCYTES_30
44.1
MONOCYTES_31
44.1
MONOCYTES_32
44.1
MONOCYTES_33
44.0
MONOCYTES_34
43.8
MONOCYTES_35
43.6
MONOCYTES_36
43.6
MONOCYTES_37
43.5
MONOCYTES_38
43.3
MONOCYTES_39
43.1
MONOCYTES_40
42.9
MONOCYTES_41
42.8
MONOCYTES_42
42.5
MONOCYTES_43
42.2
MONOCYTES_44
41.7
MONOCYTES_45
41.7
MONOCYTES_46
41.6
MONOCYTES_47
41.5
MONOCYTES_48
41.5
MONOCYTES_49
41.2
MONOCYTES_50
40.8
MONOCYTES_51
40.7
MONOCYTES_52
39.9
MONOCYTES_53
39.9
MONOCYTES_54
39.8
MONOCYTES_55
39.6
MONOCYTES_56
39.5
MONOCYTES_57
39.1
MONOCYTES_58
39.1
MONOCYTES_59
38.6
MONOCYTES_60
38.6
MONOCYTES_61
38.4
MONOCYTES_62
38.1
MONOCYTES_63
38.0
MONOCYTES_64
38.0
MONOCYTES_65
37.7
MONOCYTES_66
37.4
MONOCYTES_67
37.3
MONOCYTES_68
37.2
MONOCYTES_69
37.2
MONOCYTES_70
37.1
MONOCYTES_71
37.0
MONOCYTES_72
36.5
MONOCYTES_73
36.5
MONOCYTES_74
36.3
MONOCYTES_75
36.2
MONOCYTES_76
36.1
MONOCYTES_77
35.7
MONOCYTES_78
35.6
MONOCYTES_79
35.6
MONOCYTES_80
35.3
MONOCYTES_81
35.1
MONOCYTES_82
35.0
MONOCYTES_83
34.6
MONOCYTES_84
34.5
MONOCYTES_85
34.5
MONOCYTES_86
33.8
MONOCYTES_87
33.7
MONOCYTES_88
33.6
MONOCYTES_89
32.3
MONOCYTES_90
31.4
MONOCYTES_91
29.2
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Non-classical monocyte TPM: 69.0
Samples: 90
Max TPM: 113.5
Min TPM: 35.0
M2_1
113.5
M2_2
106.5
M2_3
96.7
M2_4
95.1
M2_5
91.4
M2_6
90.6
M2_7
89.8
M2_8
89.1
M2_9
87.9
M2_10
87.3
M2_11
86.9
M2_12
86.0
M2_13
84.6
M2_14
83.3
M2_15
82.8
M2_16
82.1
M2_17
81.9
M2_18
81.6
M2_19
81.0
M2_20
80.8
M2_21
80.0
M2_22
79.3
M2_23
78.8
M2_24
78.6
M2_25
78.3
M2_26
76.3
M2_27
75.0
M2_28
74.8
M2_29
74.7
M2_30
74.7
M2_31
74.3
M2_32
74.1
M2_33
73.7
M2_34
73.6
M2_35
72.8
M2_36
71.6
M2_37
71.4
M2_38
71.3
M2_39
71.2
M2_40
70.4
M2_41
69.7
M2_42
69.1
M2_43
69.1
M2_44
68.0
M2_45
67.9
M2_46
67.5
M2_47
67.1
M2_48
67.0
M2_49
65.8
M2_50
65.5
M2_51
65.3
M2_52
63.4
M2_53
63.4
M2_54
62.8
M2_55
62.6
M2_56
62.5
M2_57
62.2
M2_58
61.9
M2_59
61.7
M2_60
61.4
M2_61
60.6
M2_62
60.6
M2_63
60.4
M2_64
60.3
M2_65
60.0
M2_66
59.3
M2_67
59.2
M2_68
58.3
M2_69
57.6
M2_70
57.2
M2_71
57.1
M2_72
56.5
M2_73
56.3
M2_74
56.2
M2_75
55.9
M2_76
55.9
M2_77
55.5
M2_78
55.3
M2_79
54.0
M2_80
53.0
M2_81
52.7
M2_82
52.5
M2_83
51.5
M2_84
50.9
M2_85
49.4
M2_86
49.3
M2_87
48.7
M2_88
47.6
M2_89
47.4
M2_90
35.0
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